PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00025868-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 171aa MW: 19189.8 Da PI: 7.0935 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53 | 6e-17 | 3 | 55 | 5 | 57 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++eq++ Le+ F +++ e++ +LA+ lg++ rq+ +W+qN+Ra++k+ SMil_00025868-RA_Salv 3 KRLNQEQVRLLEASFDAGKKLEPERKFQLARDLGVPPRQIAIWYQNKRARWKN 55 4689***********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 103.3 | 2e-33 | 2 | 92 | 3 | 93 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 k+rl++eqv+lLE sF++ +kLeperK +lar+Lg+ prq+a+W+qn+RAR+k++ lE d+ a++ ++da +e+++Lek+v+ L+ elk SMil_00025868-RA_Salv 2 KKRLNQEQVRLLEASFDAGKKLEPERKFQLARDLGVPPRQIAIWYQNKRARWKNQSLELDHGAIQVRLDAALAEKRELEKQVDMLQVELK 91 99************************************************************************************9998 PP HD-ZIP_I/II 93 e 93 + SMil_00025868-RA_Salv 92 R 92 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 1.1E-10 | 1 | 60 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 15.499 | 1 | 56 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.36E-13 | 2 | 57 | No hit | No description |
Pfam | PF00046 | 2.6E-14 | 3 | 55 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.9E-16 | 3 | 62 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-17 | 4 | 60 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 31 | 54 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MKKRLNQEQV RLLEASFDAG KKLEPERKFQ LARDLGVPPR QIAIWYQNKR ARWKNQSLEL 60 DHGAIQVRLD AALAEKRELE KQVDMLQVEL KRAQDMLFGF RQAQAQAAGR GGPPVSSLSS 120 CCDEGGGSSS LNDDVGCSAN WPNVEELYAC LMAKGPNCPV SEVVNERDYW V |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012848848.1 | 6e-76 | PREDICTED: homeobox-leucine zipper protein ATHB-52 | ||||
TrEMBL | A0A4D8Z868 | 2e-91 | A0A4D8Z868_SALSN; Homeobox-leucine zipper protein | ||||
STRING | Migut.M00776.1.p | 2e-73 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2715 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 9e-33 | homeobox protein 52 |