PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00025820-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

CO-like

Protein Properties

Length: 319aa MW: 35342.5 Da PI: 5.4289

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00025820-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	30	1.1e-09	11	46	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkgHtv 39 + C+ ++ +++ fC+ ++ +lC++C + H +H + SMil_00025820-RA_Salv 11 KPCDSCKAAPATVFCRADSAFLCATCDTDLHARHAR 46 67********************************76 PP
2	zf-B_box	26.5	1.3e-08	47	89	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 ++C+ +e+ ++ C+ ++ lC+ C +H+ H++ SMil_00025820-RA_Salv 47 VWVCDVCEQAPAAVTCKADDAALCPACDADIHSAnplarrHER 89 689*****************************65777777776 PP
3	CCT	69.6	7.9e-24	262	306	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea+++RYkeKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF++++e SMil_00025820-RA_Salv 262 REARVMRYKEKRKNRRFEKTIRYASRKAYAETRPRIKGRFARRSE 306 9*****************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.537	8	49	IPR000315	B-box-type zinc finger
SMART	SM00336	9.3E-9	8	49	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.7E-7	11	46	IPR000315	B-box-type zinc finger
CDD	cd00021	8.49E-11	12	49	No hit	No description
PROSITE profile	PS50119	10.139	45	92	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.1E-6	47	91	IPR000315	B-box-type zinc finger
CDD	cd00021	7.16E-9	48	92	No hit	No description
SMART	SM00336	1.2E-8	50	92	IPR000315	B-box-type zinc finger
PROSITE profile	PS51017	16.817	262	304	IPR010402	CCT domain
Pfam	PF06203	1.2E-17	262	304	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MGGDSWSLTA KPCDSCKAAP ATVFCRADSA FLCATCDTDL HARHARVWVC DVCEQAPAAV 60 TCKADDAALC PACDADIHSA NPLARRHERF PVVPFYHAAV KTPRSADFSE EEVEAASWIL 120 PDPNTKPLED SGSPAEYMFS DMDPDPYPDL DLMHKPGHII VDDKKQYSTD GVVPVQTEKE 180 YGSGHYPGPV VDGYPTYDVD YPASKPFMYN FTSQSISHSV SSSSLEVGVV PEPEPEPEPE 240 HNGNGDASKV EIAPTRVSGM EREARVMRYK EKRKNRRFEK TIRYASRKAY AETRPRIKGR 300 FARRSELQID ASYGVVPTF

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB897788	5e-48	AB897788.1 Lemna gibba LgCOH1 mRNA for CONSTANS-like protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078988.1	1e-142	zinc finger protein CONSTANS-LIKE 4-like
Swissprot	Q9FHH8	1e-83	COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBL	A0A022QPG5	1e-138	A0A022QPG5_ERYGU; Uncharacterized protein
STRING	Migut.E01434.1.p	1e-139	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1035	23	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	4e-64	CONSTANS-like 5

Publications ? help Back to Top
Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518]