PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00025750-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

GRAS

Protein Properties

Length: 545aa MW: 59448.9 Da PI: 4.6824

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00025750-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	450.4	1.2e-137	175	539	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 lv++L++cAeav++++++la+al++++ la ++ +m+++a+yf+eALa+r+++ + p e+ +++ s+ l++ f+e+ SMil_00025750-RA_Salv 175 LVHTLMACAEAVQQENMKLADALVKHVGLLAVSQVGAMRKVATYFAEALARRIYK--------IYPHEALDSSLSDILQM--HFYETG 252 689*************************************************9........44555554556666555..5* PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176 P+lkf+h+taNqaIlea++g++rvH+iDf++ qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++Ae++gv+f SMil_00025750-RA_Salv 253 PYLKFAHFTANQAILEAFAGANRVHVIDFSLRQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNSDALQQVGWKLAQLAETIGVEF 340 ************************************************************************************ PP GRAS 177 efnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 ef+ +v+++l+dl+ ++L+++ +E++aVn+v++lh+ll++++++e+ vL+ vk ++Pk+v+vveqea+hn++ Fl+rf eal+ SMil_00025750-RA_Salv 341 EFRGFVTNSLADLDADMLEIRGgdEETVAVNSVFELHQLLARPGAIEK----VLDSVKAMRPKIVTVVEQEANHNGSAFLDRFNEALH 424 *****************9989*******************....******************************** PP GRAS 263 yysalfdsleak..lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sd 347 yys++fdsle + ++ ++ ++ +++lgr+i+nvvac gaer+erhetl++Wr r+++aGF pv+l+++a kqa++ll+ ++ +d SMil_00025750-RA_Salv 425 YYSTMFDSLECSesTQPDGTQDLMMTEVYLGRQICNVVACDGAERVERHETLAQWRGRMNSAGFDPVHLGSNAFKQASMLLALFSsGD 512 *****6551144455999************************************************************** PP GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374 gyrvee++gsl+lgW++rpL+++SaWr SMil_00025750-RA_Salv 513 GYRVEESDGSLMLGWHTRPLIATSAWR 539 ************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF12041	2.7E-33	29	94	IPR021914	Transcriptional factor DELLA, N-terminal
SMART	SM01129	2.3E-32	29	102	No hit	No description
PROSITE profile	PS50985	68.059	149	518	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.1E-135	175	539	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence Send to blast
MKRDRDRGKA AAAGKPKMWT EPQADAGMDD LFAVLGYKVK SSDMADVAEK LEQLEMAMGT 60 TADDGVSVLA NDSVHYNPSD LSGWVESMLS ELSSSCGFDN DMGISGESSS SKFINFSGDD 120 DLRAIPGGAV FGNKQKEESE NGSKRMKGSE FAENCSPASA TRSVVVDSQE TGVRLVHTLM 180 ACAEAVQQEN MKLADALVKH VGLLAVSQVG AMRKVATYFA EALARRIYKI YPHEALDSSL 240 SDILQMHFYE TGPYLKFAHF TANQAILEAF AGANRVHVID FSLRQGMQWP ALMQALALRP 300 GGPPAFRLTG IGPPQPDNSD ALQQVGWKLA QLAETIGVEF EFRGFVTNSL ADLDADMLEI 360 RGGDEETVAV NSVFELHQLL ARPGAIEKVL DSVKAMRPKI VTVVEQEANH NGSAFLDRFN 420 EALHYYSTMF DSLECSESTQ PDGTQDLMMT EVYLGRQICN VVACDGAERV ERHETLAQWR 480 GRMNSAGFDP VHLGSNAFKQ ASMLLALFSS GDGYRVEESD GSLMLGWHTR PLIATSAWRI 540 TAPDQ

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence Send to blast

MKRDRDRGKA AAAGKPKMWT EPQADAGMDD LFAVLGYKVK SSDMADVAEK LEQLEMAMGT  60
TADDGVSVLA NDSVHYNPSD LSGWVESMLS ELSSSCGFDN DMGISGESSS SKFINFSGDD  120
DLRAIPGGAV FGNKQKEESE NGSKRMKGSE FAENCSPASA TRSVVVDSQE TGVRLVHTLM  180
ACAEAVQQEN MKLADALVKH VGLLAVSQVG AMRKVATYFA EALARRIYKI YPHEALDSSL  240
SDILQMHFYE TGPYLKFAHF TANQAILEAF AGANRVHVID FSLRQGMQWP ALMQALALRP  300
GGPPAFRLTG IGPPQPDNSD ALQQVGWKLA QLAETIGVEF EFRGFVTNSL ADLDADMLEI  360
RGGDEETVAV NSVFELHQLL ARPGAIEKVL DSVKAMRPKI VTVVEQEANH NGSAFLDRFN  420
EALHYYSTMF DSLECSESTQ PDGTQDLMMT EVYLGRQICN VVACDGAERV ERHETLAQWR  480
GRMNSAGFDP VHLGSNAFKQ ASMLLALFSS GDGYRVEESD GSLMLGWHTR PLIATSAWRI  540
TAPDQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	6e-67	182	538	25	377	Protein SCARECROW
5b3h_D	6e-67	182	538	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269\|PubMed:15347801}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097451.1	0.0	DELLA protein GAI
Swissprot	Q7Y1B6	0.0	GAI_SOLLC; DELLA protein GAI
TrEMBL	A0A4D8YZF2	0.0	A0A4D8YZF2_SALSN; DELLA protein
STRING	Migut.K00894.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2126	24	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	0.0	GRAS family protein

Publications ? help Back to Top
Nir I, et al. The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure. Plant Cell, 2017. 29(12): p. 3186-3197 [PMID:29150547]