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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00025750-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | GRAS | ||||||||
Protein Properties | Length: 545aa MW: 59448.9 Da PI: 4.6824 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 450.4 | 1.2e-137 | 175 | 539 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 lv++L++cAeav++++++la+al++++ la ++ +m+++a+yf+eALa+r+++ + p e+ +++ s+ l++ f+e+ SMil_00025750-RA_Salv 175 LVHTLMACAEAVQQENMKLADALVKHVGLLAVSQVGAMRKVATYFAEALARRIYK--------IYPHEALDSSLSDILQM--HFYETG 252 689***************************************************9........44555554556666555..5***** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176 P+lkf+h+taNqaIlea++g++rvH+iDf++ qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++Ae++gv+f SMil_00025750-RA_Salv 253 PYLKFAHFTANQAILEAFAGANRVHVIDFSLRQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNSDALQQVGWKLAQLAETIGVEF 340 **************************************************************************************** PP GRAS 177 efnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 ef+ +v+++l+dl+ ++L+++ +E++aVn+v++lh+ll++++++e+ vL+ vk ++Pk+v+vveqea+hn++ Fl+rf eal+ SMil_00025750-RA_Salv 341 EFRGFVTNSLADLDADMLEIRGgdEETVAVNSVFELHQLLARPGAIEK----VLDSVKAMRPKIVTVVEQEANHNGSAFLDRFNEALH 424 *********************9989***********************....************************************ PP GRAS 263 yysalfdsleak..lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sd 347 yys++fdsle + ++ ++ ++ +++lgr+i+nvvac gaer+erhetl++Wr r+++aGF pv+l+++a kqa++ll+ ++ +d SMil_00025750-RA_Salv 425 YYSTMFDSLECSesTQPDGTQDLMMTEVYLGRQICNVVACDGAERVERHETLAQWRGRMNSAGFDPVHLGSNAFKQASMLLALFSsGD 512 *********6551144455999****************************************************************** PP GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374 gyrvee++gsl+lgW++rpL+++SaWr SMil_00025750-RA_Salv 513 GYRVEESDGSLMLGWHTRPLIATSAWR 539 **************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF12041 | 2.7E-33 | 29 | 94 | IPR021914 | Transcriptional factor DELLA, N-terminal |
SMART | SM01129 | 2.3E-32 | 29 | 102 | No hit | No description |
PROSITE profile | PS50985 | 68.059 | 149 | 518 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.1E-135 | 175 | 539 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 545 aa Download sequence Send to blast |
MKRDRDRGKA AAAGKPKMWT EPQADAGMDD LFAVLGYKVK SSDMADVAEK LEQLEMAMGT 60 TADDGVSVLA NDSVHYNPSD LSGWVESMLS ELSSSCGFDN DMGISGESSS SKFINFSGDD 120 DLRAIPGGAV FGNKQKEESE NGSKRMKGSE FAENCSPASA TRSVVVDSQE TGVRLVHTLM 180 ACAEAVQQEN MKLADALVKH VGLLAVSQVG AMRKVATYFA EALARRIYKI YPHEALDSSL 240 SDILQMHFYE TGPYLKFAHF TANQAILEAF AGANRVHVID FSLRQGMQWP ALMQALALRP 300 GGPPAFRLTG IGPPQPDNSD ALQQVGWKLA QLAETIGVEF EFRGFVTNSL ADLDADMLEI 360 RGGDEETVAV NSVFELHQLL ARPGAIEKVL DSVKAMRPKI VTVVEQEANH NGSAFLDRFN 420 EALHYYSTMF DSLECSESTQ PDGTQDLMMT EVYLGRQICN VVACDGAERV ERHETLAQWR 480 GRMNSAGFDP VHLGSNAFKQ ASMLLALFSS GDGYRVEESD GSLMLGWHTR PLIATSAWRI 540 TAPDQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 6e-67 | 182 | 538 | 25 | 377 | Protein SCARECROW |
5b3h_D | 6e-67 | 182 | 538 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097451.1 | 0.0 | DELLA protein GAI | ||||
Swissprot | Q7Y1B6 | 0.0 | GAI_SOLLC; DELLA protein GAI | ||||
TrEMBL | A0A4D8YZF2 | 0.0 | A0A4D8YZF2_SALSN; DELLA protein | ||||
STRING | Migut.K00894.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2126 | 24 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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