PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00025727-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NF-X1
Protein Properties Length: 1061aa    MW: 115491 Da    PI: 8.1578
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00025727-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.26.2e-07301319119
               zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                            CG+H+C++ CH GpC+pC+
  SMil_00025727-RA_Salv 301 CGRHPCERVCHIGPCDPCQ 319
                            ******************6 PP
2zf-NF-X116.12.5e-05365382118
               zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                            CG+H C + CH+GpC++C
  SMil_00025727-RA_Salv 365 CGNHICPEVCHPGPCGEC 382
                            ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578509.18E-8123194No hitNo description
PROSITE profilePS500168.929131192IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.701134190IPR001841Zinc finger, RING-type
PROSITE patternPS013590134189IPR019786Zinc finger, PHD-type, conserved site
CDDcd060084.34E-6223284No hitNo description
SMARTSM004380.023246264IPR000967Zinc finger, NF-X1-type
PfamPF014227.9248263IPR000967Zinc finger, NF-X1-type
CDDcd060082.03E-11291339No hitNo description
PfamPF014224.5E-5301318IPR000967Zinc finger, NF-X1-type
SMARTSM004387.1E-5301320IPR000967Zinc finger, NF-X1-type
CDDcd060082.23E-7355398No hitNo description
PfamPF014220.0015365382IPR000967Zinc finger, NF-X1-type
SMARTSM004380.003365384IPR000967Zinc finger, NF-X1-type
CDDcd060083.61E-13413461No hitNo description
PfamPF014225.3E-4417440IPR000967Zinc finger, NF-X1-type
SMARTSM004384.3E-4423442IPR000967Zinc finger, NF-X1-type
CDDcd060082.36E-5471530No hitNo description
PfamPF0142217481492IPR000967Zinc finger, NF-X1-type
SMARTSM0043816481516IPR000967Zinc finger, NF-X1-type
CDDcd060081.78E-5544592No hitNo description
PfamPF0142210554571IPR000967Zinc finger, NF-X1-type
SMARTSM004380.045554572IPR000967Zinc finger, NF-X1-type
PfamPF014220.0071607622IPR000967Zinc finger, NF-X1-type
SMARTSM004380.019607637IPR000967Zinc finger, NF-X1-type
PfamPF0142255639665IPR000967Zinc finger, NF-X1-type
SMARTSM004380.037646667IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3306.8E-4862905IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1061 aa     Download sequence    Send to blast
MSSEQNRRRE NINFRPRNNN SSRNNRREWV PRGTAPVVAV VQVPPTSADS ADQNEIGNGG  60
ALVDRPVHPV VPNRNRTHGA SRGNPGHRHV VQREKEKVEK KHFRDDNVRM MKGVNIPQLV  120
QEIQDKLTKG SVECMICYDM VRRSAPVWSC SSCYSIFHLN CIKKWARAPT SVDLMAEKNQ  180
GTNWRCPGCQ SVQLMSAKEI RYICFCGKRP DPPSDLYLTP HSCGEPCGKP LERELPGSGM  240
SDEDICPHVC VLQCHPGPCP PCKAFAPPRR CPCGKKVITT RCSDRKSVLT CGKRCDKLLD  300
CGRHPCERVC HIGPCDPCQV LVNASCFCRK KVEVLLCGDM AVKGEIKDQD GLFSCNLACE  360
NKLNCGNHIC PEVCHPGPCG ECELLPGKIK ACCCGKTSLN EERQNCLDPI PTCTQNCGKT  420
LPCKLHNCQS VCHSGPCPPC NVLVTQKCRC GSTSRTVECY RTALDGEKFT CDRPCGRKKS  480
CGRHRCSERC CPLSNSSSSS MADGDPHFGH CPPCLETIFT DLTCACGRTS IPPPLPCGTP  540
PPSCQYPCSV PQPCGHPSSH SCHFGDCPPC TVPIPKECVG GHVVLRSIPC GSKDIRCNKL  600
CGKTRQCGLH ACSRTCHPPP CDSSAAPSTS LRTSCRQTCG APRRDCRHTC TAICHPATPC  660
PDVRCEFPVT ITCSCGRLPL PLQPVEENGE KTPLGSRKLM CDDECAKVER KKVLADAFGV  720
TPPTLDTLHF GDTASVSEVL SDLLRRDPKW VLSVEERCRY LVLGRGRGGI NALKVHVFCV  780
MTKEKRDAVR LVAERWKLSV NAAGWEPKRF IIVHVTPKSK APARMLGVKS CNPGNMLQPP  840
IFDPVVDMDP RLVVALFDLP READVSALVL RFGGECELVW LNDKNALAVF SDPGRAATAM  900
RRLDQGSVYY GAVAVPQNGG ASVATSGASA WGSSAASKDP ASGAALKGNP WKKVVLQESE  960
YKESSWGAEE WSVNAADPKL HHWKDKEAPT ASSSNRWSVL QSGSTSKSSD ASAKIEKQAE  1020
TPNVSASKGE ESSLNAAPLQ PEGMSNSMSG DVVDDWEKAY D
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083338.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A4D9AJG20.0A0A4D9AJG2_SALSN; Transcriptional repressor NF-X1
STRINGMigut.D01221.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93132428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1