PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00025700-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

GRAS

Protein Properties

Length: 457aa MW: 51033.8 Da PI: 6.1995

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00025700-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	411.7	6.9e-126	86	456	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 l++lL++cA+a+s+++l + ++lL++ + ++s +g p++Rl ay++e+L ar +s+ ++y+al++ e + + l+++++ ++++ SMil_00025700-RA_Salv 86 LKHLLIACARALSEDELDEFDKLLEHARGRVSITGAPIERLGAYMLEGLVARKESSGANIYRALKCHEPD---GNDLLSYMHTMYQLC 170 689****************************************************************9...99********* PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174 P+lkf++++aN aI ea ++++r+HiiDf+i qG+QW +LlqaLa+Rp+g+p++RiTgv++p s + l ++ger a++ +++++ SMil_00025700-RA_Salv 171 PYLKFTYMAANGAIAEACKNHDRIHIIDFQIAQGTQWTTLLQALADRPGGAPTVRITGVDDPVSRfaRGAGLAALGERFAEISKKFNI 258 **********************************************************999999**************** PP GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 ++ef+++ a r +d++ +L+++ gEalaVn+ lqlh+++desv+++++rd +L++vkslsPkvv++veqe+++n++ Fl rf+e+le SMil_00025700-RA_Salv 259 RVEFQPVPALRAQDVTRGMLDIRAGEALAVNFPLQLHHTPDESVDVSNPRDGLLRMVKSLSPKVVTLVEQESNTNTAAFLPRFVETLE 346 **9999************************************************************************** PP GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350 yy+a+f+sl++++ r s+eri vE+++l+r++vnv+aceg+er+erhe l+kWr+r+++aGF++ +ls ++++ ++ llr ++ + y+ SMil_00025700-RA_Salv 347 YYTAMFESLDVGATRGSKERIDVEQHCLARDVVNVIACEGKERVERHELLGKWRSRFMMAGFEQCALSPYVNSVIRGLLRCYS-EHYS 433 ***************************************************************************9999.66 PP GRAS 351 veeesgslvlgWkdrpLvsvSaW 373 + e++g ++l Wk+r+L+s+SaW SMil_00025700-RA_Salv 434 LVEKDGGMLLAWKTRNLISASAW 456 *********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.631	60	438	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.4E-123	86	456	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MESHCFAYGV TAAGLSYTPY SNPSSIPTGF DPPSHFYNHY HDTQHQITST DFHQSPLDHH 60 IRHALHELES ALMAADDDDD PPPTDLKHLL IACARALSED ELDEFDKLLE HARGRVSITG 120 APIERLGAYM LEGLVARKES SGANIYRALK CHEPDGNDLL SYMHTMYQLC PYLKFTYMAA 180 NGAIAEACKN HDRIHIIDFQ IAQGTQWTTL LQALADRPGG APTVRITGVD DPVSRFARGA 240 GLAALGERFA EISKKFNIRV EFQPVPALRA QDVTRGMLDI RAGEALAVNF PLQLHHTPDE 300 SVDVSNPRDG LLRMVKSLSP KVVTLVEQES NTNTAAFLPR FVETLEYYTA MFESLDVGAT 360 RGSKERIDVE QHCLARDVVN VIACEGKERV ERHELLGKWR SRFMMAGFEQ CALSPYVNSV 420 IRGLLRCYSE HYSLVEKDGG MLLAWKTRNL ISASAWH

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MESHCFAYGV TAAGLSYTPY SNPSSIPTGF DPPSHFYNHY HDTQHQITST DFHQSPLDHH  60
IRHALHELES ALMAADDDDD PPPTDLKHLL IACARALSED ELDEFDKLLE HARGRVSITG  120
APIERLGAYM LEGLVARKES SGANIYRALK CHEPDGNDLL SYMHTMYQLC PYLKFTYMAA  180
NGAIAEACKN HDRIHIIDFQ IAQGTQWTTL LQALADRPGG APTVRITGVD DPVSRFARGA  240
GLAALGERFA EISKKFNIRV EFQPVPALRA QDVTRGMLDI RAGEALAVNF PLQLHHTPDE  300
SVDVSNPRDG LLRMVKSLSP KVVTLVEQES NTNTAAFLPR FVETLEYYTA MFESLDVGAT  360
RGSKERIDVE QHCLARDVVN VIACEGKERV ERHELLGKWR SRFMMAGFEQ CALSPYVNSV  420
IRGLLRCYSE HYSLVEKDGG MLLAWKTRNL ISASAWH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-63	90	457	8	375	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097940.1	0.0	scarecrow-like protein 21
Swissprot	Q69VG1	0.0	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	A0A291I304	0.0	A0A291I304_SALMI; GRAS2 transcription factor
STRING	Gorai.002G080600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3441	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	1e-151	GRAS family protein

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627]