PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00025539-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 608aa MW: 67314.1 Da PI: 5.9909

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00025539-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.2	0.00068	551	590	5	47
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekA 47 +n+ E + ++i++++ +Lr +P+ +s+ + ++iLekA SMil_00025539-RA_Salv 551 KNIDENNFLNQIRTKLMNLRPTVPSG---TSTNVQVMTILEKA 590 7999*********************8...78888888888887 PP

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence Send to blast
LFVRKTMPLV RVEVRNEYGL GAPEMYIDAS NEEPKEILQG VAVAGLVGLL RQLGDLADFA 60 AEVFHGLNEE LMETCSRSRK LMDRVLQVEA EVVPVEKAVL AQQSHLHLAY TAGVNWHVPD 120 RCQQNLFVYN DMPLFILDFY EVCRSPPQFH LLDRFDPGGP GSCLKRYSDP AIYNMTSKSS 180 GDASTEKVAK YKKLEKTKKR RSCPMNGTSR GASFAYLDSR MQSSSNVGHN TSFCQPTDYS 240 ALRSDLYEQS NSDKRNELCY SKDDMCSSYS MQSQEEKLRG LSAQTTGDSL NPSNAKSIGM 300 PIIGNTKSKS SHEPEKPIAE SSKVTSITFW SNGWEEDSSH ASYLNSNAFE QKKHPNCAYQ 360 TVHGRNEDLC KGVSLMQLPS SSPPLAHMKI SVQPIGGFRT SKKKLKFMEG IIDHGSIDVL 420 PSFQLVPAVS KLNVGSDSDD DTFRVSSSPS LSDDFHSHHS ESSSDQFESS ILNQPFQNEK 480 RKDTYSNEPE FATAADPPPP LYLLCYASSS SQQDKPAPLN HDQDLETANE QQNKPFSSEK 540 SDAKEEAKGG KNIDENNFLN QIRTKLMNLR PTVPSGTSTN VQVMTILEKA NAIRKAVGSD 600 DGGNCSDT

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence Send to blast

LFVRKTMPLV RVEVRNEYGL GAPEMYIDAS NEEPKEILQG VAVAGLVGLL RQLGDLADFA  60
AEVFHGLNEE LMETCSRSRK LMDRVLQVEA EVVPVEKAVL AQQSHLHLAY TAGVNWHVPD  120
RCQQNLFVYN DMPLFILDFY EVCRSPPQFH LLDRFDPGGP GSCLKRYSDP AIYNMTSKSS  180
GDASTEKVAK YKKLEKTKKR RSCPMNGTSR GASFAYLDSR MQSSSNVGHN TSFCQPTDYS  240
ALRSDLYEQS NSDKRNELCY SKDDMCSSYS MQSQEEKLRG LSAQTTGDSL NPSNAKSIGM  300
PIIGNTKSKS SHEPEKPIAE SSKVTSITFW SNGWEEDSSH ASYLNSNAFE QKKHPNCAYQ  360
TVHGRNEDLC KGVSLMQLPS SSPPLAHMKI SVQPIGGFRT SKKKLKFMEG IIDHGSIDVL  420
PSFQLVPAVS KLNVGSDSDD DTFRVSSSPS LSDDFHSHHS ESSSDQFESS ILNQPFQNEK  480
RKDTYSNEPE FATAADPPPP LYLLCYASSS SQQDKPAPLN HDQDLETANE QQNKPFSSEK  540
SDAKEEAKGG KNIDENNFLN QIRTKLMNLR PTVPSGTSTN VQVMTILEKA NAIRKAVGSD  600
DGGNCSDT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022848047.1	6e-93	protein SCAR3-like isoform X1
Refseq	XP_022848048.1	6e-93	protein SCAR1-like isoform X2
TrEMBL	A0A2G9HPY0	7e-96	A0A2G9HPY0_9LAMI; Uncharacterized protein
STRING	Migut.H01430.1.p	2e-88	(Erythranthe guttata)