PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00025063-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 233aa MW: 26689.6 Da PI: 7.5926 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.5 | 2.6e-19 | 66 | 118 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++++eqle Le+ F+++ ++ +++ +LAk+lgL+ rq+ +WFqNrRa++k SMil_00025063-RA_Salv 66 KKRLSNEQLELLENSFHEEIKLEPDRKMKLAKELGLQPRQIAIWFQNRRARWK 118 5569************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 122.6 | 1.9e-39 | 65 | 155 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 kk+rls+eq++lLE+sF+ee kLep+rK++la+eLglqprq+a+WFqnrRAR+k k+lE+ y+aLk++yda+++++++L++ev +Lr+ SMil_00025063-RA_Salv 65 KKKRLSNEQLELLENSFHEEIKLEPDRKMKLAKELGLQPRQIAIWFQNRRARWKGKRLEHLYDALKQEYDAVARDKHKLQQEVIALRA 152 9**************************************************************************************8 PP HD-ZIP_I/II 90 elk 92 lk SMil_00025063-RA_Salv 153 ILK 155 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.11E-18 | 47 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 9.8E-18 | 63 | 124 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.584 | 65 | 120 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.90E-17 | 65 | 118 | No hit | No description |
Pfam | PF00046 | 1.7E-16 | 66 | 118 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-20 | 67 | 127 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.2E-6 | 91 | 100 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 95 | 118 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.2E-6 | 100 | 116 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.1E-7 | 120 | 154 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MDWNGNIKMP YVSRPVDTSN FSSLYNCSFD HFPGLEMKQQ TMLPMIMNKN MNMNMNMNNL 60 GVDPKKKRLS NEQLELLENS FHEEIKLEPD RKMKLAKELG LQPRQIAIWF QNRRARWKGK 120 RLEHLYDALK QEYDAVARDK HKLQQEVIAL RAILKDQVAK KLVLSTGYTD ISGEETVEST 180 SIPSSDNHPP AAAAPVAGLH QIEECNYTLN MADYNNTMAA TPPYWATSMP SCP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011101501.1 | 1e-102 | putative homeobox-leucine zipper protein ATHB-51 isoform X1 | ||||
TrEMBL | A0A4D8Z4S5 | 1e-116 | A0A4D8Z4S5_SALSN; Homeobox-leucine zipper protein | ||||
TrEMBL | A0A4D9AFU6 | 1e-116 | A0A4D9AFU6_SALSN; Homeobox-leucine zipper protein | ||||
STRING | Migut.J00491.1.p | 4e-92 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3869 | 22 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 4e-43 | homeobox 51 |