PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00025013-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 705aa MW: 79638.2 Da PI: 9.0835

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00025013-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26.8	1.8e-08	177	230	39	90
FAR1 39 gkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 gk+e++ ++ ++++rr++++tr C+a++ + + g++ ++++++ HnH+l SMil_00025013-RA_Salv 177 GKNEKHPENqpKTTKRRRKPSTRNACRARVITRILDGGEFIISRFDEVHNHKLI 230 55555444455789999***********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.6E-6	177	230	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.8E-8	352	404	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.804	517	553	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.8E-4	523	545	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0037	528	555	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 705 aa Download sequence Send to blast
MGEERNRIYL RLVDDRGGAR LFPVSPAVAV VGEDGCDGGG SLCCPIPSKG SREVGQPSLG 60 PFGRREREAS KRRRQRTAEA ERGSIFPAGD EGRPREREAA LAGGGAAISQ RGGADVREGK 120 RESVVCAECA ENNHVQANNF TSYLPICDDS LKPYVGQTFN SVDDAFDFYA LEGINPGKNE 180 KHPENQPKTT KRRRKPSTRN ACRARVITRI LDGGEFIISR FDEVHNHKLI SPDCRHLMKY 240 NRKVDASHHM VMLKCAKANI GPMRAFRLFK ELVGKYEDVG CTSNDFKNLS YQMNSYTEGS 300 DAQLLLERLI TKRDTDDQFK CEYLLDECHK VKSIFWSDAV GVHNYKVFGD SVSFDATYTT 360 NRYDMIFAPF TGKDNHGGCV TFAAGLLTRE DIPAYFRDLR MSGLFRTTSM SESENSFFRK 420 YLNRHSNLAA FYIHYESAMQ AQRHSYKQLC MTDQTTTPKL KTNKPIEQHA SRIYTSKIFL 480 EVQVEIVEAF NRCRIRSMDT GHEEHRYAVD DRSSGVFNVA HNTLSNTIDC SCKHFLKKGL 540 VCRHMFVVMH NIGLNAIPQK YILGRWMQNA GVGVMSNTQT QTSNKPLMSE AFRCIAIVDG 600 NEALSASLIA ELKRWADANQ PQSSTSVNAK ERMFQTFYGA KLPTKITIHP PDHVKTKGSG 660 KRLKSTYEKE LEKAKKPRRR CQKCGFMVRH DSRNCGKVVE EDSEE

Sequence ? help Back to Top

Protein Sequence Length: 705 aa Download sequence Send to blast

MGEERNRIYL RLVDDRGGAR LFPVSPAVAV VGEDGCDGGG SLCCPIPSKG SREVGQPSLG  60
PFGRREREAS KRRRQRTAEA ERGSIFPAGD EGRPREREAA LAGGGAAISQ RGGADVREGK  120
RESVVCAECA ENNHVQANNF TSYLPICDDS LKPYVGQTFN SVDDAFDFYA LEGINPGKNE  180
KHPENQPKTT KRRRKPSTRN ACRARVITRI LDGGEFIISR FDEVHNHKLI SPDCRHLMKY  240
NRKVDASHHM VMLKCAKANI GPMRAFRLFK ELVGKYEDVG CTSNDFKNLS YQMNSYTEGS  300
DAQLLLERLI TKRDTDDQFK CEYLLDECHK VKSIFWSDAV GVHNYKVFGD SVSFDATYTT  360
NRYDMIFAPF TGKDNHGGCV TFAAGLLTRE DIPAYFRDLR MSGLFRTTSM SESENSFFRK  420
YLNRHSNLAA FYIHYESAMQ AQRHSYKQLC MTDQTTTPKL KTNKPIEQHA SRIYTSKIFL  480
EVQVEIVEAF NRCRIRSMDT GHEEHRYAVD DRSSGVFNVA HNTLSNTIDC SCKHFLKKGL  540
VCRHMFVVMH NIGLNAIPQK YILGRWMQNA GVGVMSNTQT QTSNKPLMSE AFRCIAIVDG  600
NEALSASLIA ELKRWADANQ PQSSTSVNAK ERMFQTFYGA KLPTKITIHP PDHVKTKGSG  660
KRLKSTYEKE LEKAKKPRRR CQKCGFMVRH DSRNCGKVVE EDSEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	64	73	REREASKRRR
2	186	192	PKTTKRR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3136	2	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-25	FAR1-related sequence 5