PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00024981-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | B3 | ||||||||
Protein Properties | Length: 318aa MW: 35372.9 Da PI: 6.9387 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 106.5 | 1.3e-33 | 94 | 198 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k ltpsdv+k++rlv+pk++ae+h g++ e++ l +ede g+sW+++++y+++s++yvltkGW++Fvk+++L++gD+vvF SMil_00024981-RA_Salv 94 FEKPLTPSDVGKLNRLVIPKQHAEKHfplnasGESGENGLLLGFEDELGKSWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDIVVF 181 99*****************************9555667889*********************************************** PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 +++ + ++l+++++r+ SMil_00024981-RA_Salv 182 ARHRVDAGRLFIGWRRR 198 *8777**********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.5E-39 | 87 | 198 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.05E-30 | 91 | 197 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.60E-30 | 92 | 193 | No hit | No description |
Pfam | PF02362 | 1.4E-30 | 94 | 198 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.692 | 94 | 199 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.5E-25 | 94 | 199 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010358 | Biological Process | leaf shaping | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MSINHFSTEL PEAHWWSHYT MDHSAPAKTS SPYQKPCIST TANSHNSAAA FYRAAPMFCS 60 PAPAFDLNNE DDEESADEHA SSTSDHEIPK DRLFEKPLTP SDVGKLNRLV IPKQHAEKHF 120 PLNASGESGE NGLLLGFEDE LGKSWRFRYS YWNSSQSYVL TKGWSRFVKE KRLDAGDIVV 180 FARHRVDAGR LFIGWRRRTS VGGLDAAAAQ PVASGSGGAW SRVIYPGHPY QIQQQPPSNS 240 LHFQSEGVHA GYHQKQTSSA GSGNSKTLRL FGVNLECQAD ESEASTPLGS PMSSQGQAPY 300 HHQQYHYYSN NHMIHELQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 5e-51 | 90 | 202 | 4 | 117 | B3 domain-containing transcription factor NGA1 |
5os9_B | 5e-51 | 90 | 202 | 4 | 117 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094282.1 | 1e-100 | B3 domain-containing protein At2g36080 | ||||
Swissprot | Q9FNI3 | 2e-67 | Y5625_ARATH; B3 domain-containing protein At5g06250 | ||||
TrEMBL | A0A2G9HGL2 | 1e-114 | A0A2G9HGL2_9LAMI; Uncharacterized protein | ||||
STRING | Migut.J00664.1.p | 1e-91 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3801 | 24 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06250.2 | 6e-65 | B3 family protein |