PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00024981-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 318aa    MW: 35372.9 Da    PI: 6.9387
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00024981-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3106.51.3e-3394198199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k ltpsdv+k++rlv+pk++ae+h      g++ e++  l +ede g+sW+++++y+++s++yvltkGW++Fvk+++L++gD+vvF
  SMil_00024981-RA_Salv  94 FEKPLTPSDVGKLNRLVIPKQHAEKHfplnasGESGENGLLLGFEDELGKSWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDIVVF 181
                            99*****************************9555667889*********************************************** PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                             +++ + ++l+++++r+
  SMil_00024981-RA_Salv 182 ARHRVDAGRLFIGWRRR 198
                            *8777**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-3987198IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.05E-3091197IPR015300DNA-binding pseudobarrel domain
CDDcd100174.60E-3092193No hitNo description
PfamPF023621.4E-3094198IPR003340B3 DNA binding domain
PROSITE profilePS5086314.69294199IPR003340B3 DNA binding domain
SMARTSM010193.5E-2594199IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MSINHFSTEL PEAHWWSHYT MDHSAPAKTS SPYQKPCIST TANSHNSAAA FYRAAPMFCS  60
PAPAFDLNNE DDEESADEHA SSTSDHEIPK DRLFEKPLTP SDVGKLNRLV IPKQHAEKHF  120
PLNASGESGE NGLLLGFEDE LGKSWRFRYS YWNSSQSYVL TKGWSRFVKE KRLDAGDIVV  180
FARHRVDAGR LFIGWRRRTS VGGLDAAAAQ PVASGSGGAW SRVIYPGHPY QIQQQPPSNS  240
LHFQSEGVHA GYHQKQTSSA GSGNSKTLRL FGVNLECQAD ESEASTPLGS PMSSQGQAPY  300
HHQQYHYYSN NHMIHELQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-51902024117B3 domain-containing transcription factor NGA1
5os9_B5e-51902024117B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094282.11e-100B3 domain-containing protein At2g36080
SwissprotQ9FNI32e-67Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A2G9HGL21e-114A0A2G9HGL2_9LAMI; Uncharacterized protein
STRINGMigut.J00664.1.p1e-91(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.26e-65B3 family protein