PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00024950-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C3H

Protein Properties

Length: 365aa MW: 39605.2 Da PI: 8.7103

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00024950-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.9	5.5e-06	314	338	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k + C++f C+ G++C + H+ SMil_00024950-RA_Salv 314 KSRACMYFNTPRGCRNGANCAYQHD 338 6789********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	2.49E-5	311	341	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.0E-4	313	339	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.432	313	340	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MGGSRKSKRI TWAAEVNLCQ VRLFSSANPP SEVGMASRSG GYEADESLPP GFEDMKPKIL 60 KLPQKTFPKW RCPPRFEVNR EWQVVSGEES KEIECENQRE RRVLEAIYPQ PSAIPPNPRL 120 PVNPQESIGG DHCIPLIPLT PIEDADAALA VADNNPMIPQ PAASSQCSDI AQAALAAVRS 180 NVDRRNLIDT DLLIRILTSP NLVQQLLSTG HAAQETPPSI STQHVPTTET NAGGALLSAP 240 QITKPELSTC CPPVADVSSA QPPPCMAKDI SYYKSLIQQH GASGGGPPRQ SCGKSKRVMG 300 ATTQEYAKSR EVLKSRACMY FNTPRGCRNG ANCAYQHDVN MLSSSRKRMG CVREVVGAKR 360 VKLGR

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MGGSRKSKRI TWAAEVNLCQ VRLFSSANPP SEVGMASRSG GYEADESLPP GFEDMKPKIL  60
KLPQKTFPKW RCPPRFEVNR EWQVVSGEES KEIECENQRE RRVLEAIYPQ PSAIPPNPRL  120
PVNPQESIGG DHCIPLIPLT PIEDADAALA VADNNPMIPQ PAASSQCSDI AQAALAAVRS  180
NVDRRNLIDT DLLIRILTSP NLVQQLLSTG HAAQETPPSI STQHVPTTET NAGGALLSAP  240
QITKPELSTC CPPVADVSSA QPPPCMAKDI SYYKSLIQQH GASGGGPPRQ SCGKSKRVMG  300
ATTQEYAKSR EVLKSRACMY FNTPRGCRNG ANCAYQHDVN MLSSSRKRMG CVREVVGAKR  360
VKLGR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074649.1	4e-86	zinc finger CCCH domain-containing protein 6
TrEMBL	A0A4D8YJU5	1e-147	A0A4D8YJU5_SALSN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5147	7	9