PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00024909-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GRAS
Protein Properties Length: 441aa    MW: 48314 Da    PI: 4.9231
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00024909-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS287.34.2e-88474302373
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                            ++lLl+c  a++s+d +laq++++ l++ as++gdp+qRla+yf++AL +r +r ++++++  p+ + ++     +++ l  ++++ P
  SMil_00024909-RA_Salv  47 EKLLLHCGSALESNDVTLAQQVMWVLNNVASSTGDPNQRLASYFLRALISRASRVCPTTMSFKPAAPHRR---LMSVTELAGYVDLLP 131
                            689***************************************************9998887555555553...2223333459***** PP

                   GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg...skeeleetgerLakfAeelg 173
                            +++f++ +aN+aIleav g   vHi+D++i++++QWp++++aL + p+gpp  lRi + +   +     + ++ee+g+rL +fA+  +
  SMil_00024909-RA_Salv 132 WHRFGFCAANSAILEAVRGFPSVHILDLSITHCMQWPTFIDALGKVPGGPPaALRISVPSWRPPApplLNASIEEVGQRLVNFAKFRD 219
                            ***********************************************888879****9887555577999****************** PP

                   GRAS 174 vpfefnvl.............vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh 248
                            vpfefnv+             + + l++l+  + +v+ +Eal+Vn++  l +l+d++  + s rd++L+ + +l+P++v+vv++++d+
  SMil_00024909-RA_Salv 220 VPFEFNVVdlggeeeeeeesaYDSLLSQLNAFAVKVNADEALVVNVQNWLRYLPDDESRIMSIRDSFLESIGRLNPRLVTVVDEDCDL 307
                            ************99987666444456677777778999************************************************** PP

                   GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
                             ++ ++ r++ +++y++  fd+le+ lp+es +ri +E   +g +i+n+v  ega r+er e+ ++  +r+  aGF++vpl+e+++k+
  SMil_00024909-RA_Salv 308 -GGGLASRIAACFNYMWIPFDALETFLPKESPQRIEYESD-IGHKIENIVGFEGAPRVERPESGSRLCHRMAGAGFTSVPLGEETVKE 393
                            .678************************************.*********************************************** PP

                   GRAS 337 aklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                            +k+ll +++ ++g++  +e++ lvl+Wk+++ v + aW
  SMil_00024909-RA_Salv 394 VKALLDEHAsGWGMKK-DEEDMLVLTWKGHNAVYAAAW 430
                            *********5555443.4456788************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.85820411IPR005202Transcription factor GRAS
PfamPF035141.4E-8547430IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MKAEARGMNP PTISPLQNPS GLFTNSRGSI SGALTGCLSS LDGACIEKLL LHCGSALESN  60
DVTLAQQVMW VLNNVASSTG DPNQRLASYF LRALISRASR VCPTTMSFKP AAPHRRLMSV  120
TELAGYVDLL PWHRFGFCAA NSAILEAVRG FPSVHILDLS ITHCMQWPTF IDALGKVPGG  180
PPAALRISVP SWRPPAPPLL NASIEEVGQR LVNFAKFRDV PFEFNVVDLG GEEEEEEESA  240
YDSLLSQLNA FAVKVNADEA LVVNVQNWLR YLPDDESRIM SIRDSFLESI GRLNPRLVTV  300
VDEDCDLGGG LASRIAACFN YMWIPFDALE TFLPKESPQR IEYESDIGHK IENIVGFEGA  360
PRVERPESGS RLCHRMAGAG FTSVPLGEET VKEVKALLDE HASGWGMKKD EEDMLVLTWK  420
GHNAVYAAAW APRANQHPLA D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-524743288474Protein SHORT-ROOT
5b3h_B8e-534743234420Protein SHORT-ROOT
5b3h_E8e-534743234420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077907.10.0scarecrow-like protein 32
SwissprotQ9SN221e-125SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A4D8ZTC50.0A0A4D8ZTC5_SALSN; Uncharacterized protein
STRINGPGSC0003DMT4000673600.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103032227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-127GRAS family protein