PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00024885-RA_Salv | ||||||||
Common Name | MYB6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB | ||||||||
Protein Properties | Length: 214aa MW: 23979.4 Da PI: 10.0276 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+t Ed ll+ +++q+G g+W++ +++ g+ R++k+c++rw +yl SMil_00024885-RA_Salv 14 RGPWSTKEDSLLASYIQQHGEGQWRSLPKKAGLLRCGKSCRLRWMNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.2 | 7e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +++E++l+v+++++lG++ W++Ia +++ gRt++++k++w+++l SMil_00024885-RA_Salv 67 RGNISEDEEDLIVRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112 7899******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.567 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.6E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.24E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.142 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.10E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MGRSACCSKV GLRRGPWSTK EDSLLASYIQ QHGEGQWRSL PKKAGLLRCG KSCRLRWMNY 60 LRPGIKRGNI SEDEEDLIVR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNT HLLKKLNTAA 120 AAADKKKIKK PPKKSAAAAA ASQDMKNSKV YAPKPMRVSS RSDSDDSLGS SDGAPEVLVS 180 AWPEVEDPAA LYHFSDSFAD DMWEKVYAEY MQLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 12 | 118 | 5 | 110 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 130 | DKKKIKKP |
2 | 125 | 133 | KKIKKPPKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF059360 | 0.0 | KF059360.1 Salvia miltiorrhiza MYB-related transcription factor (MYB6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011101013.1 | 2e-89 | transcription factor MYB6-like isoform X1 | ||||
Swissprot | Q38850 | 3e-65 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | A0A059PRI2 | 1e-156 | A0A059PRI2_SALMI; MYB-related transcription factor | ||||
STRING | PGSC0003DMT400031607 | 5e-79 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 2e-65 | myb domain protein 5 |
Publications ? help Back to Top | |||
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