PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00024858-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

G2-like

Protein Properties

Length: 375aa MW: 40461.8 Da PI: 8.1625

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00024858-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.5	4.5e-31	209	264	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH++F++a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ SMil_00024858-RA_Salv 209 KARRCWSTELHRKFLQALQQLGGSHLATPKQIRELMKVDGLTNDEVKSHLQKYRLH 264 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-27	206	267	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.028	206	266	IPR017930	Myb domain
SuperFamily	SSF46689	8.76E-18	207	266	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-26	209	264	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-7	211	262	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MTINTHNHNH TDHNSPEKMQ GCQDRIHALE EERRKIQVFS RELPLCLDLV TQAIEACKQQ 60 LSGTTTEYNL NGQSECSEQT SSDAPVLEEF IPLKRASYGE EQESKKPEHD STINIAKNCQ 120 KSDWLRSVQL WNQTPDLPSN VDSPKKVGVS EVNRNGSGGA FHPFKKEKSQ VGSGAVVVAP 180 APVNRSVPPA STSSSAETGD KKEGQSQRKA RRCWSTELHR KFLQALQQLG GSHLATPKQI 240 RELMKVDGLT NDEVKSHLQK YRLHSRRPSP SIQNNNSSQA PQFVVVGGIW VPPEYAAMAA 300 TATSGSGEAS GAATSNGIYA PVATLPMPFR EASASTKKRP LPSSDDGGSL SEGGGGSHSP 360 ATSSSTHTTT ASPAY

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MTINTHNHNH TDHNSPEKMQ GCQDRIHALE EERRKIQVFS RELPLCLDLV TQAIEACKQQ  60
LSGTTTEYNL NGQSECSEQT SSDAPVLEEF IPLKRASYGE EQESKKPEHD STINIAKNCQ  120
KSDWLRSVQL WNQTPDLPSN VDSPKKVGVS EVNRNGSGGA FHPFKKEKSQ VGSGAVVVAP  180
APVNRSVPPA STSSSAETGD KKEGQSQRKA RRCWSTELHR KFLQALQQLG GSHLATPKQI  240
RELMKVDGLT NDEVKSHLQK YRLHSRRPSP SIQNNNSSQA PQFVVVGGIW VPPEYAAMAA  300
TATSGSGEAS GAATSNGIYA PVATLPMPFR EASASTKKRP LPSSDDGGSL SEGGGGSHSP  360
ATSSSTHTTT ASPAY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-13	209	267	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-13	209	267	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-13	209	262	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-13	209	262	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-13	209	262	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-13	209	262	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-13	209	267	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-13	209	267	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-13	209	267	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-13	209	267	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-13	209	267	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-13	209	267	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070832.1	1e-177	myb family transcription factor EFM
Swissprot	Q9FPE8	4e-91	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A4D9BPT1	0.0	A0A4D9BPT1_SALSN; Two-component response regulator ARR-B family
STRING	VIT_01s0011g03110.t01	1e-145	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5219	24	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	3e-82	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]