PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00024842-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 308aa    MW: 34291.5 Da    PI: 8.4816
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00024842-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.8e-18166220256
                            T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            rk+ ++tk+q   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  SMil_00024842-RA_Salv 166 RKKLRLTKDQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 220
                            788899***********************************************98 PP
2HD-ZIP_I/II127.94.3e-41166255191
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            +kk+rl+k+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr
  SMil_00024842-RA_Salv 166 RKKLRLTKDQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR 253
                            69*************************************************************************************9 PP

            HD-ZIP_I/II  89 eel 91 
                             +l
  SMil_00024842-RA_Salv 254 -AL 255
                            .55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-17150220IPR009057Homeodomain-like
SuperFamilySSF466892.27E-18158223IPR009057Homeodomain-like
PROSITE profilePS5007116.892162222IPR001356Homeobox domain
SMARTSM003898.6E-16164226IPR001356Homeobox domain
PfamPF000461.4E-15166220IPR001356Homeobox domain
CDDcd000869.29E-16166223No hitNo description
PROSITE patternPS000270197220IPR017970Homeobox, conserved site
CDDcd146860.01215254No hitNo description
SMARTSM003407.2E-26222265IPR003106Leucine zipper, homeobox-associated
PfamPF021836.8E-11222256IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MELALSLGDT PKPFSFLEKP QKILSKDLGF CMGTGKVSSD GGEKNKKSDE RRFSDGPNSS  60
DPPVQLDLLP FSPVQRSQPS SNKLPFPWLN DKLGGGSESA SRKGDDDQEA AALSSPNSAV  120
SSFQMDFSMF RSARGKRDFE QFAGEAEADR GASSRGSDDE ENGMARKKLR LTKDQSAFLE  180
ESFKEHNTLN PKQKLALAKQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEY LKRCCETLTE  240
ENRRLQKELQ ELRALKASQP FYMQLPATTL TMCPSCERVV TTTAAASTSN RFSLDPPPPH  300
ACAQNTPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214222RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075258.11e-150homeobox-leucine zipper protein HOX11
SwissprotP466651e-92HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A4D9B7B61e-175A0A4D9B7B6_SALSN; Homeobox-leucine zipper protein
STRINGVIT_08s0007g06670.t011e-128(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-78homeobox from Arabidopsis thaliana