PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00024781-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | LBD | ||||||||
Protein Properties | Length: 170aa MW: 19020.6 Da PI: 7.3699 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141.1 | 3.7e-44 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +Ca+Ck+lrr+CakdCv++pyfp ++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ SMil_00024781-RA_Salv 7 PCASCKLLRRRCAKDCVFSPYFPPDDPHKFAIVHKVFGASNVSKMLQELPFHQRGDAVSSLVYEANARMRDPVYGCVGAISYLQNQVS 94 7*************************************************************************************** PP DUF260 89 qlkaelallkee 100 ql+ +la++++e SMil_00024781-RA_Salv 95 QLQMQLAVAQAE 106 ********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.408 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-43 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MGGGTSPCAS CKLLRRRCAK DCVFSPYFPP DDPHKFAIVH KVFGASNVSK MLQELPFHQR 60 GDAVSSLVYE ANARMRDPVY GCVGAISYLQ NQVSQLQMQL AVAQAEILCI QMQQEQQQQQ 120 PPFMPNNNDS AQDEKSLVNF SSLQHYLSFA STSSTNNVMQ DPLKRESLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-49 | 3 | 108 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-49 | 3 | 108 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080777.1 | 7e-95 | LOB domain-containing protein 12 | ||||
Swissprot | Q8LBW3 | 1e-77 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A4D8YKN4 | 1e-103 | A0A4D8YKN4_SALSN; Uncharacterized protein | ||||
STRING | VIT_06s0004g07200.t01 | 8e-93 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 4e-76 | LBD family protein |
Publications ? help Back to Top | |||
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