PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00024781-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LBD
Protein Properties Length: 170aa    MW: 19020.6 Da    PI: 7.3699
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00024781-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.13.7e-4471061100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +Ca+Ck+lrr+CakdCv++pyfp ++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++
  SMil_00024781-RA_Salv   7 PCASCKLLRRRCAKDCVFSPYFPPDDPHKFAIVHKVFGASNVSKMLQELPFHQRGDAVSSLVYEANARMRDPVYGCVGAISYLQNQVS 94 
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                            ql+ +la++++e
  SMil_00024781-RA_Salv  95 QLQMQLAVAQAE 106
                            ********9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.4086107IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-437104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MGGGTSPCAS CKLLRRRCAK DCVFSPYFPP DDPHKFAIVH KVFGASNVSK MLQELPFHQR  60
GDAVSSLVYE ANARMRDPVY GCVGAISYLQ NQVSQLQMQL AVAQAEILCI QMQQEQQQQQ  120
PPFMPNNNDS AQDEKSLVNF SSLQHYLSFA STSSTNNVMQ DPLKRESLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-4931087112LOB family transfactor Ramosa2.1
5ly0_B3e-4931087112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080777.17e-95LOB domain-containing protein 12
SwissprotQ8LBW31e-77LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A4D8YKN41e-103A0A4D8YKN4_SALSN; Uncharacterized protein
STRINGVIT_06s0004g07200.t018e-93(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.14e-76LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]