PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00024745-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 216aa MW: 25565 Da PI: 8.4859 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.4 | 3.8e-21 | 61 | 113 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eql Le+ F +++++ +e++e+LA++lgL+ rqV vWFqNrRa++k SMil_00024745-RA_Salv 61 KRKLSEEQLSMLERSFGSEHKLETERKERLAAELGLDPRQVAVWFQNRRARWK 113 45899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 116.5 | 1.5e-37 | 60 | 151 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kr+ls+eq+++LE+sF +e+kLe+erK++la eLgl+prqvavWFqnrRAR+ktk lE+++++L++++++ e+++L++ev +++e SMil_00024745-RA_Salv 60 RKRKLSEEQLSMLERSFGSEHKLETERKERLAAELGLDPRQVAVWFQNRRARWKTKMLEEEFSKLRSHHESTLVEKCHLQTEVVKMKE 147 8*************************************************************************************** PP HD-ZIP_I/II 90 elke 93 +l+e SMil_00024745-RA_Salv 148 QLSE 151 9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.265 | 55 | 115 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.4E-20 | 58 | 119 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-19 | 60 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.62E-15 | 60 | 116 | No hit | No description |
Pfam | PF00046 | 1.8E-18 | 61 | 113 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-21 | 62 | 122 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.5E-6 | 86 | 95 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 90 | 113 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.5E-6 | 95 | 111 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
LLLLTHKFIM NHEFNDMSEY YPAGMISCQF VPEQGEAEKL KTRRRRRKGK GGEDGGGMMR 60 KRKLSEEQLS MLERSFGSEH KLETERKERL AAELGLDPRQ VAVWFQNRRA RWKTKMLEEE 120 FSKLRSHHES TLVEKCHLQT EVVKMKEQLS EAEREIQRLS ERWERVRSHS PTSSRSVSID 180 TTQHFLGAQF GIDNVFCVPD TNYAHAFQWD DHLYYM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 43 | 61 | RRRRKGKGGEDGGGMMRKR |
2 | 45 | 62 | RRKGKGGEDGGGMMRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097229.1 | 6e-71 | homeobox-leucine zipper protein ATHB-40-like | ||||
Swissprot | Q9ZU70 | 6e-61 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | A0A4D9BUJ6 | 7e-91 | A0A4D9BUJ6_SALSN; Homeobox-leucine zipper protein | ||||
STRING | Solyc02g085630.2.1 | 4e-66 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 1e-48 | homeobox protein 40 |
Publications ? help Back to Top | |||
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