PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00024671-RA_Salv | ||||||||
Common Name | MYB104 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB | ||||||||
Protein Properties | Length: 294aa MW: 33941.7 Da PI: 7.4298 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.2 | 1.6e-17 | 98 | 143 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l+d+v +G+ +W++Ia+++ gR++k+c++rw++ SMil_00024671-RA_Salv 98 RGHWKPSEDEKLKDLVSAYGPQNWNLIAERLE-GRSGKSCRLRWYNQ 143 899*****************************.************96 PP | |||||||
2 | Myb_DNA-binding | 58.3 | 1.8e-18 | 150 | 194 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++T++E+e+l +a++ +G++ W++I+r ++ gRt++++k++w+ + SMil_00024671-RA_Salv 150 KKAFTEDEEERLMEAHRIYGNK-WALISRLFP-GRTDNSVKNHWHVL 194 679*******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.055 | 93 | 144 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-15 | 97 | 146 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-16 | 98 | 144 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.06E-28 | 98 | 191 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-26 | 99 | 151 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.30E-13 | 101 | 142 | No hit | No description |
PROSITE profile | PS51294 | 26.401 | 145 | 199 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-15 | 149 | 197 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-16 | 150 | 194 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-20 | 152 | 197 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.23E-11 | 152 | 195 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MQQQQHHHIS RRHRENGGAS LIDRLLSPMF SLGFSANPPD QIILGFQSSN IHDREEEEEE 60 EEEEEEEEAT YKSFKKNGEN PNSSCKKREN RGTKFCARGH WKPSEDEKLK DLVSAYGPQN 120 WNLIAERLEG RSGKSCRLRW YNQLDPKINK KAFTEDEEER LMEAHRIYGN KWALISRLFP 180 GRTDNSVKNH WHVLMARRSR EKSKSYMKMK WACSKPPPLD HTKIPNYYYA SHSGYEHFIN 240 HAGNSYSPGS TSQRSFTAPI SSLTSAADHY QDAPCYVESV EAPTFIDFLG VGSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-33 | 92 | 198 | 1 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF059458 | 0.0 | KF059458.1 Salvia miltiorrhiza MYB-related transcription factor (MYB104) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098643.2 | 9e-89 | myb-related protein A-like isoform X2 | ||||
Swissprot | Q9SEZ4 | 5e-68 | MY105_ARATH; Transcription factor MYB105 | ||||
TrEMBL | A0A059PRF8 | 0.0 | A0A059PRF8_SALMI; MYB-related transcription factor | ||||
STRING | XP_004172495.1 | 7e-69 | (Cucumis sativus) | ||||
STRING | AES96795 | 5e-68 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1784 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 3e-70 | myb domain protein 105 |
Publications ? help Back to Top | |||
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