PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00024488-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 167aa MW: 19360 Da PI: 9.9754 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 14.8 | 4.9e-05 | 35 | 63 | 1 | 29 |
TT--SS--HHHHHHHHHHHHHSSS--HHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaee 29 rrk+ ++tkeq + Lee F++n++++ ++ SMil_00024488-RA_Salv 35 RRKKLRLTKEQSRLLEESFKQNHTLNPRR 63 79999*******************99765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-4 | 16 | 63 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 167 aa Download sequence Send to blast |
MKELDINQVP SSGTDEECME EEKEEGESPN RGLARRKKLR LTKEQSRLLE ESFKQNHTLN 60 PRRYKGARLD VFRSMRNMRP AWVASRGQSK LVWVTPSVQQ QNFHKQQRHF HLQTWAFQRN 120 PVALMGGNYA LDTLVWGNIS LVEVAVFVDL TLDQGMSLVP HIRSSVE |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022776390.1 | 3e-16 | homeobox-leucine zipper protein HOX3-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G70920.1 | 5e-13 | homeobox-leucine zipper protein 18 |