PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00024399-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family YABBY
Protein Properties Length: 202aa    MW: 22721.9 Da    PI: 9.5235
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00024399-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY144.61e-44441864163
                  YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekees 91 
                            + +se+vCyv+C+fCnt+lav +P + l+ ++tv+CGhC++l  ++ + ++q   + +           +++  + +++ s  +k +s
  SMil_00024399-RA_Salv  44 QPASEHVCYVRCTFCNTVLAVGIPCKRLLDTLTVKCGHCSNLSFLSTKPQAQGH-CYD-----------HQTSLHYQAFCSEFKKGQS 119
                            5689************************************98654433333222.222...........2445566666666655555 PP

                  YABBY  92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                            as+s s     ++++ ++p++p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa +
  SMil_00024399-RA_Salv 120 ASSSSS-----TSSEPSSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY 186
                            554444.....4667889999*************************************************76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046909.7E-5446186IPR006780YABBY protein
SuperFamilySSF470958.9E-9130184IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.4E-5140185IPR009071High mobility group box domain
CDDcd013908.08E-6147183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
PHRQQLQALI FYFIHISLYK YTYSFTLHLS PYNPSIFITM DLAQPASEHV CYVRCTFCNT  60
VLAVGIPCKR LLDTLTVKCG HCSNLSFLST KPQAQGHCYD HQTSLHYQAF CSEFKKGQSA  120
SSSSSTSSEP SSPKAPFVVK PPEKKHRLPS AYNRFMKEEI QRIKAANPEI PHREAFSAAA  180
KNWARYIPNT PQTTASTSSN KA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the initiation of nectary development. Also involved in suppressing early radial growth of the gynoecium, in promoting its later elongation and in fusion of its carpels by regulating both cell division and expansion. Establishes the polar differentiation in the carpels by specifying abaxial cell fate in the ovary wall. Regulates both cell division and expansion. {ECO:0000269|PubMed:10225997, ECO:0000269|PubMed:10225998, ECO:0000269|PubMed:10535738, ECO:0000269|PubMed:11714690, ECO:0000269|PubMed:15598802, ECO:0000269|Ref.10}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by SPT and by A class genes AP2 and LUG in the outer whorl. In the third whorl, B class genes AP3 and PI, and the C class gene AG act redundantly with each other and in combination with SEP1, SEP2, SEP3, SHP1 and SHP2 to activate CRC in nectaries and carpels. LFY enhances its expression. {ECO:0000269|PubMed:10225998, ECO:0000269|PubMed:15598802}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010650015.17e-89PREDICTED: protein CRABS CLAW isoform X1
SwissprotQ8L9253e-64CRC_ARATH; Protein CRABS CLAW
TrEMBLA0A4D9A9N01e-108A0A4D9A9N0_SALSN; Uncharacterized protein
STRINGVIT_01s0011g00140.t011e-86(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52102339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.12e-65YABBY family protein
Publications ? help Back to Top
  1. Fourquin C,Primo A,Martínez-Fernández I,Huet-Trujillo E,Ferrándiz C
    The CRC orthologue from Pisum sativum shows conserved functions in carpel morphogenesis and vascular development.
    Ann. Bot., 2014. 114(7): p. 1535-44
    [PMID:24989787]
  2. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]
  3. Yamaguchi N,Huang J,Xu Y,Tanoi K,Ito T
    Fine-tuning of auxin homeostasis governs the transition from floral stem cell maintenance to gynoecium formation.
    Nat Commun, 2017. 8(1): p. 1125
    [PMID:29066759]
  4. Yamaguchi N, et al.
    Chromatin-mediated feed-forward auxin biosynthesis in floral meristem determinacy.
    Nat Commun, 2018. 9(1): p. 5290
    [PMID:30538233]