PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00024366-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 345aa    MW: 38276.9 Da    PI: 5.4082
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00024366-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.86.2e-16122168455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  SMil_00024366-RA_Salv 122 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 168
                            6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-19116178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-20116178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.35E-16121172No hitNo description
PfamPF000102.1E-13122168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MANLYDTSTN NYYSPQEPDE ISLFLQQILL RSNSSPSHSL PRQHSHLVPT SDGIAAEQHV  60
AIGQISALNS CSTCGFANVS LENLENETDD CDYESEEAVE AAVGETVAKA RCSTKRTRAA  120
EVHNLSEKRR RSRINEKMKA LQNLIPNSNK TDKASMLDEA IEYLKQLQLQ VQMLTMRNGL  180
NLYPICLPGM LQSNQVSQMR ADVYATDKYS NVNMMKEVRL DQNISADSLL GLPENCVKQE  240
HVSDFSSMIG SKTSMEVESS MQQHHFGAFQ FSRSSFKKTE KVLPRQPFME DCPQTSSAGA  300
KTTSSIRLDT QTSDLKANIL EGCVAGADIL LTNYVSNPVF SSHDS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575150.0KP257515.1 Salvia miltiorrhiza clone 82 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099122.11e-132transcription factor SPATULA
TrEMBLA0A0H3YC580.0A0A0H3YC58_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.H00420.1.p7e-86(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98502227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.14e-43bHLH family protein