PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00024326-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 163aa MW: 18132 Da PI: 7.2224 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 63.9 | 3.2e-20 | 1 | 38 | 17 | 58 |
ZF-HD_dimer 17 lGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +Gg+a+DGCgEfmp+ ++ +al+C+ACgCHRnFHR+e + SMil_00024326-RA_Salv 1 MGGNATDGCGEFMPT----ADLDALTCSACGCHRNFHRKEAD 38 7*************9....6899****************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 4.0E-12 | 1 | 40 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 17.261 | 1 | 36 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 9.8E-19 | 1 | 36 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.7E-15 | 1 | 37 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE pattern | PS00028 | 0 | 42 | 62 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MGGNATDGCG EFMPTADLDA LTCSACGCHR NFHRKEADGD PCDGCYPRIG RKLFLGHHHH 60 QHKGYRPHQM IMHSYNSRRP LRVRRAGRRQ SAAAGEEEVQ NQVQSGAEGE DAQLCRESWV 120 ENTEAGRRSG AAVLPRSWSQ EKSFEGMDAQ QQAYSCKEDP SSI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015940090.2 | 3e-30 | zinc-finger homeodomain protein 4 | ||||
Swissprot | O64722 | 2e-17 | ZHD3_ARATH; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | A0A4D8YCK1 | 2e-35 | A0A4D8YCK1_SALSN; Uncharacterized protein | ||||
TrEMBL | A0A4D9AL90 | 1e-35 | A0A4D9AL90_SALSN; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5154 | 23 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 2e-19 | homeobox protein 31 |
Publications ? help Back to Top | |||
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