PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00024304-RA_Salv | ||||||||
Common Name | MYB54 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB | ||||||||
Protein Properties | Length: 267aa MW: 29444.7 Da PI: 8.5584 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.6e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l+++++ +G g+W++ ++ g+ R++k+c++rw +yl SMil_00024304-RA_Salv 14 KGAWTKDEDQRLINYIRAHGEGNWRSLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 60 | 5.2e-19 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEde++++++ +lG++ W++Ia +++ gRt++++k++w+++ SMil_00024304-RA_Salv 67 RGNFTEEEDEIIIKLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.519 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.06E-30 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.58E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 29.376 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-28 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-18 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-17 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.00E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKD EDQRLINYIR AHGEGNWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDEIIIK LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HIKRKLISSG 120 VDPQTHRPLN STAAAAAAAT ITRXDFRNSA PPPPSKEANS SSAHDTNCNS TTTEESQAPP 180 RPREEESGDA VDLELSIGLP SQSNYVKSAS FNSSSSAESK SIHDFLWPAA AAAEVVAPPP 240 MCVCRPLGFQ KGQFGNCQSC NGIYRYC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-31 | 14 | 116 | 7 | 108 | B-MYB |
1h8a_C | 2e-30 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF059408 | 0.0 | KF059408.1 Salvia miltiorrhiza MYB-related transcription factor (MYB54) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012854909.1 | 1e-121 | PREDICTED: myb-related protein 330 | ||||
Swissprot | P81395 | 1e-114 | MYB30_ANTMA; Myb-related protein 330 | ||||
TrEMBL | A0A059PRE8 | 0.0 | A0A059PRE8_SALMI; MYB-related transcription factor | ||||
STRING | Migut.C01291.1.p | 1e-121 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 5e-88 | myb domain protein 6 |
Publications ? help Back to Top | |||
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