PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00024157-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 722aa    MW: 82406.7 Da    PI: 10.0181
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00024157-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3438.3e-145986801196
                            HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEE CS
                     B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr..sefelvvk 95 
                            l  ++l++pk+ +++       ++  ++ +  g++W++ +  ++k ++  + ++GW++Fv +n+L+ gD ++F+l+++  ++ +l+v 
  SMil_00024157-RA_Salv 598 LDICNLIVPKHMFRKLPR----DVVPMVLTHGGKKWNMSY--NGKVKQhKFESTGWRNFVADNNLECGDACIFELMESgpKGVRLRVV 679
                            456889999999988843....34457778899*******..777777245669********************98543555566665 PP

                            E CS
                     B3  96 v 96 
                            +
  SMil_00024157-RA_Salv 680 I 680
                            5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139666.7E-13242297IPR026960Reverse transcriptase zinc-binding domain
PROSITE profilePS5087911.984359471IPR002156Ribonuclease H domain
SuperFamilySSF530983.16E-17362471IPR012337Ribonuclease H-like domain
CDDcd062229.80E-20365467No hitNo description
Gene3DG3DSA:3.30.420.105.3E-8384470IPR012337Ribonuclease H-like domain
PfamPF134564.0E-13386467No hitNo description
SuperFamilySSF1019361.16E-14585682IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-13586681IPR015300DNA-binding pseudobarrel domain
CDDcd100171.69E-12589682No hitNo description
SMARTSM010197.7E-8590684IPR003340B3 DNA binding domain
PfamPF023621.3E-11599681IPR003340B3 DNA binding domain
PROSITE profilePS5086310.898603684IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0004523Molecular FunctionRNA-DNA hybrid ribonuclease activity
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MNSSNKESTV DLXSFKVAGM KSAIHRELSF TTGNLPFNYL GVLIFVGRPR ASFFQAIHDR  60
IVQKFARWKG RHLSMAGRLC LVKSVIQSSI VHSMMVYKWP KSLLHSLDRK CRNFVWSGNI  120
DKRPSCAVSW GRVCSPLKEG GLGIRSFTLM NKSYLMKLAW KLIQGTVWAH SILRSRYLNN  180
FGVAKDSVSN SSVWIGMKEE VNQLVDDSYR DTRYWKQSVK GEVSASLAFS NICHRFPAVS  240
WGKWIWEDFI PMRRSILCWR VLHGRLPTID VLIRQGLIAP NACSLCLQDS ETISHDLCFD  300
RRAVLAFVKA YFMEIDGVFR KLGNISNSWA DYSITRVIGV RSRAAPPPCM VEVHWWPPVS  360
QWIKVNTDGS AAGAPGVIAA GGNGFAFEAE LLAVIYAIHI AHTRGWRHLW VEADSMYVVH  420
LLYSRSSDVP WRFRAFWQHT LRLLRDFSLM VSHIYREGNQ PADIMANDDR QEGWWPFAIE  480
EIRIAVARDM STHSHIRMPS FLGVMVRPEL LKLSLPAPEP DVEGGQLHLL GFYFLVREYQ  540
QKMWNPSKQD ARSIPEKKGV KVLKANEENP AAAQVEVDDG LPCLSGDKPF FDVILKELDI  600
CNLIVPKHMF RKLPRDVVPM VLTHGGKKWN MSYNGKVKQH KFESTGWRNF VADNNLECGD  660
ACIFELMESG PKGVRLRVVI LRIPTICRLN CRQKYLMAKP MLKAFAHLFS THLEMLHLLS  720
KA
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.15e-07B3 family protein