PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00024156-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 148aa    MW: 16276.7 Da    PI: 6.5033
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00024156-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.59.8e-13591253599
                            EEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE.E-SS.SEE..EEEEE-S CS
                     B3  35 tltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFk.ldgr.sefelvvkvfrk 99 
                             + l  ++g ++W+  +  +++ +r  +  +GWk+Fv +n+Lk+gD +vF+ l+++ +  +l+v ++r+
  SMil_00024156-RA_Salv  59 AVPLVLRHGdKEWRTLY--NGGCSRpRIEYAGWKSFVVDNNLKVGDACVFEvLESStEILRLRVLILRN 125
                            44455555559******..88888855666*********************544555777777777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.1E-1524126IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-1425123IPR015300DNA-binding pseudobarrel domain
CDDcd100171.64E-1528124No hitNo description
PROSITE profilePS5086310.30630126IPR003340B3 DNA binding domain
SMARTSM010190.005530126IPR003340B3 DNA binding domain
PfamPF023624.7E-1059124IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MNEGNTGGGV ISSSAEVDGL RCLSGDKPFF DVILSKSHID PPHCLRVPTH ILPSLPSVAV  60
PLVLRHGDKE WRTLYNGGCS RPRIEYAGWK SFVVDNNLKV GDACVFEVLE SSTEILRLRV  120
LILRNTMYLP PQLLPSDGRT PETAIEIP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D9A0K38e-60A0A4D9A0K3_SALSN; Uncharacterized protein
STRINGXP_010097681.12e-31(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-09B3 family protein