PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00024006-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 621aa MW: 71912.7 Da PI: 9.205

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00024006-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	42.9	1.6e-13	37	127	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleH 85 kfY+ YAk GF+vr+ ++++ ++g++ ++ C+++g + + + + + +t++ t+Cka+ + + +g +++ ++++ H SMil_00024006-RA_Salv 37 KFYKLYAKAYGFEVRMGTKERA-KDGTVRMHYALCNRQGVWAYADAS-RINPHTKKRRTTSCKANCMARAIFqvtTGGYYIRTFNEGH 122 6**************99998.77779999999**9999988.44444444445555555444443333499******* PP FAR1 86 nHela 90 +H++a SMil_00024006-RA_Salv 123 SHSMA 127 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.2E-11	37	127	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-27	182	273	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.903	419	458	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.6E-4	428	450	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0036	433	460	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 621 aa Download sequence Send to blast
MADDSSSSIA KLCFPKVEDS RIPHTGQMFA NLHDGVKFYK LYAKAYGFEV RMGTKERAKD 60 GTVRMHYALC NRQGVWAYAD ASRINPHTKK RRTTSCKANC MARAIFQVTT GGYYIRTFNE 120 GHSHSMANIG PMHTFRMVRE MVGSYKGVGC TSTDFKNYVR DLKVYNKDEI SIKNFKTFGE 180 AISFDVTYNT NRYKLIFTPF TGRDNHGKCI SFGAALISKE DTESYSWVLD KFVQIMGRAP 240 RLIITDQDPG LKRAVSSSWK DARHRYCMWH ISMKVAKKVP IRLRDDQDYK SKFENIIWSD 300 HEDPDAFEEN WNNMIDEYEL SDNRWFSDMF EDRMFWVPAY FRNVSMSGLF RTTSCSESEN 360 SFFKRFINKN ADLVLLYKNY GSALDAQRNS YFETTHADET RRPRMVTNLP IEDHASTVYT 420 NAIFKETQSE DDLTCTCNLF NRKGYLCRHV FLVIINSQCD KIPQKYISLR WCKFSLLCPG 480 EAQSELHNEY SQDSSNEEFR YFKIVGEIIP HIRLNEDLKN QFFADLMELK NKFSNTGCME 540 QTSVAKKRRF EKFYGAAPTD SPSVMPPDIS RTKGSGVGGR RKSDQEKAIL LAKKPMRLCR 600 KCQTKGHHDS RNCPTKQATN I

Sequence ? help Back to Top

Protein Sequence Length: 621 aa Download sequence Send to blast

MADDSSSSIA KLCFPKVEDS RIPHTGQMFA NLHDGVKFYK LYAKAYGFEV RMGTKERAKD  60
GTVRMHYALC NRQGVWAYAD ASRINPHTKK RRTTSCKANC MARAIFQVTT GGYYIRTFNE  120
GHSHSMANIG PMHTFRMVRE MVGSYKGVGC TSTDFKNYVR DLKVYNKDEI SIKNFKTFGE  180
AISFDVTYNT NRYKLIFTPF TGRDNHGKCI SFGAALISKE DTESYSWVLD KFVQIMGRAP  240
RLIITDQDPG LKRAVSSSWK DARHRYCMWH ISMKVAKKVP IRLRDDQDYK SKFENIIWSD  300
HEDPDAFEEN WNNMIDEYEL SDNRWFSDMF EDRMFWVPAY FRNVSMSGLF RTTSCSESEN  360
SFFKRFINKN ADLVLLYKNY GSALDAQRNS YFETTHADET RRPRMVTNLP IEDHASTVYT  420
NAIFKETQSE DDLTCTCNLF NRKGYLCRHV FLVIINSQCD KIPQKYISLR WCKFSLLCPG  480
EAQSELHNEY SQDSSNEEFR YFKIVGEIIP HIRLNEDLKN QFFADLMELK NKFSNTGCME  540
QTSVAKKRRF EKFYGAAPTD SPSVMPPDIS RTKGSGVGGR RKSDQEKAIL LAKKPMRLCR  600
KCQTKGHHDS RNCPTKQATN I

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12684	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-51	FAR1-related sequence 5