PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00023993-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Nin-like

Protein Properties

Length: 871aa MW: 101030 Da PI: 6.9154

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00023993-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	34.9	3e-11	699	742	4	46
RWP-RK 4 eisledlskyFslpikdAAkeLg.vclTvLKriCRqyGIkRWPh 46 +++le l+++F +p+kd+ k+L ++ +++Kr+C +y I+RWP SMil_00023993-RA_Salv 699 NLNLEILKQHFGKPLKDVEKNLVvIGRSTIKRACKEYHIDRWPN 742 899*****************857****************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55781	1.26E-7	123	215	IPR029016	GAF domain-like
Gene3D	G3DSA:3.30.450.40	3.6E-7	138	226	IPR029016	GAF domain-like
PROSITE profile	PS51519	11.126	683	768	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-9	699	743	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.92E-15	775	862	No hit	No description
Gene3D	G3DSA:3.10.20.240	4.8E-16	782	861	No hit	No description
SMART	SM00666	3.4E-14	782	864	IPR000270	PB1 domain
PROSITE profile	PS51745	17.17	782	862	IPR000270	PB1 domain
Pfam	PF00564	3.6E-13	783	862	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 871 aa Download sequence Send to blast
MDRLQYEEGV LSILQGGEGC RDWCAEISEF KQHLHQEEVG LVHGELNRGW VLYETEQRQY 60 SYYATQLQDK IIKLLKHMAS ECPSMDYYYM MQFWGVVKVE GKHHHLSSSH LPFLVDFFLS 120 KGVCWYRKQS RDEVYVVNVQ ADSGDEEQLG GVVGRVYRNK RPESSPDLRL YSAHDFPMRD 180 KAAACGFKSY MALPLFDSNT NQCYGVLEIL SRREPESEIK VILELAKKTF PQLYMAQVWV 240 PCQQCQCVNI NTNLCCMEFV YHVNADSYWD GRKNYSEASE FHKLQIDIRS CHSNLCDLTI 300 SKNPLAHYAQ RARMSRSFAV SLEDINNSSH LYVIQFFLQP NNCKDYSQQQ LLRIMAMKLK 360 GFKFVVDYEK PNTIGCGLNV MESYEENFSK SEFTTYLEIV SDSCCQKPYK GWVFSCQNLV 420 ESDSLLIYEK VENFMKSLRM KQGYWIVQFW KARMEKDRCY LQTLDQPFAL GRLAKGLASY 480 RKKCTRHQYF VDDQAKEEEL PPPARVFRNR HHEISPDHLF PYTTNEFSIT NYAVDCGSKG 540 GYLALPVFDD EHNHKCVGVL EFLGFDYDQL QLIKDGLKHE FKSFKLACGK QLGEELVVEV 600 IEFSDANKLD SSDSEHTDVF PIKFKSVQYS QHSEEQHTEE HNVAASNSKR KEKGKRKIEE 660 PSITASESNS KEKGKQKIEE PVADSKTREK GKRKSGRMNL NLEILKQHFG KPLKDVEKNL 720 VVIGRSTIKR ACKEYHIDRW PNKEEHIKNL SLIQKQSGRD SQQDTSNEYT HPVIVVEEEK 780 EKVMIKVKYK EDTIKFELCL SLGVSKLFEE VATRLKLKVD TFKLKYVDED NDEILLACDA 840 DLHLCPKTPT ATGQTCIHFF VQIFLNSSYG T

Sequence ? help Back to Top

Protein Sequence Length: 871 aa Download sequence Send to blast

MDRLQYEEGV LSILQGGEGC RDWCAEISEF KQHLHQEEVG LVHGELNRGW VLYETEQRQY  60
SYYATQLQDK IIKLLKHMAS ECPSMDYYYM MQFWGVVKVE GKHHHLSSSH LPFLVDFFLS  120
KGVCWYRKQS RDEVYVVNVQ ADSGDEEQLG GVVGRVYRNK RPESSPDLRL YSAHDFPMRD  180
KAAACGFKSY MALPLFDSNT NQCYGVLEIL SRREPESEIK VILELAKKTF PQLYMAQVWV  240
PCQQCQCVNI NTNLCCMEFV YHVNADSYWD GRKNYSEASE FHKLQIDIRS CHSNLCDLTI  300
SKNPLAHYAQ RARMSRSFAV SLEDINNSSH LYVIQFFLQP NNCKDYSQQQ LLRIMAMKLK  360
GFKFVVDYEK PNTIGCGLNV MESYEENFSK SEFTTYLEIV SDSCCQKPYK GWVFSCQNLV  420
ESDSLLIYEK VENFMKSLRM KQGYWIVQFW KARMEKDRCY LQTLDQPFAL GRLAKGLASY  480
RKKCTRHQYF VDDQAKEEEL PPPARVFRNR HHEISPDHLF PYTTNEFSIT NYAVDCGSKG  540
GYLALPVFDD EHNHKCVGVL EFLGFDYDQL QLIKDGLKHE FKSFKLACGK QLGEELVVEV  600
IEFSDANKLD SSDSEHTDVF PIKFKSVQYS QHSEEQHTEE HNVAASNSKR KEKGKRKIEE  660
PSITASESNS KEKGKQKIEE PVADSKTREK GKRKSGRMNL NLEILKQHFG KPLKDVEKNL  720
VVIGRSTIKR ACKEYHIDRW PNKEEHIKNL SLIQKQSGRD SQQDTSNEYT HPVIVVEEEK  780
EKVMIKVKYK EDTIKFELCL SLGVSKLFEE VATRLKLKVD TFKLKYVDED NDEILLACDA  840
DLHLCPKTPT ATGQTCIHFF VQIFLNSSYG T

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A4D8ZBT5	1e-162	A0A4D8ZBT5_SALSN; S-phase kinase-associated protein 1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15694	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	5e-14	Nin-like family protein