PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00023954-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 149aa MW: 16562.6 Da PI: 9.9838 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.5 | 3e-17 | 27 | 76 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ ++ Aa+a++ a +l+g SMil_00023954-RA_Salv 27 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTALFYLRG 76 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.11E-20 | 27 | 85 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.812 | 27 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-35 | 27 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-11 | 28 | 39 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-29 | 28 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.04E-25 | 28 | 85 | No hit | No description |
Pfam | PF00847 | 6.9E-11 | 28 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-11 | 66 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001078 | Molecular Function | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MEGACCTASS TSSSEISKRK HRKQDKPYRG IRMRKWGKWV AEIREPNKRS RIWLGSYSSP 60 VAAARAYDTA LFYLRGPTAR LNFPEYIVKD VVDEPSDLSA AAIRKKATEV GARVDALQSA 120 GGHARSTPGR AFEKPDLNEY PSPESSEDN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-15 | 24 | 84 | 2 | 63 | ATERF1 |
3gcc_A | 8e-15 | 24 | 84 | 2 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00595 | DAP | Transfer from AT5G67190 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011074400.1 | 2e-80 | ethylene-responsive transcription factor ERF008-like | ||||
Swissprot | Q9FH94 | 1e-49 | ERF10_ARATH; Ethylene-responsive transcription factor ERF010 | ||||
TrEMBL | A0A4D8Y115 | 2e-84 | A0A4D8Y115_SALSN; EREBP-like factor | ||||
STRING | Migut.N02735.1.p | 4e-75 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA943 | 23 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67190.1 | 2e-51 | DREB and EAR motif protein 2 |
Publications ? help Back to Top | |||
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