PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00023932-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 296aa MW: 34167.1 Da PI: 9.9383

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00023932-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43.7	9e-14	5	77	24	90
FAR1 24 rngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +++++ + f C +eg + ++kk+ ++k rr++++tr gCka+++ ++++dg ++ t++++ HnH+l+ SMil_00023932-RA_Salv 5 KHRQVLYQYFICRREGVKPDSKKDisessvQKKIRRRKPSTRNGCKARITTTLNDDGYYVFTSFSELHNHSLV 77 456789999***********999999999**********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-11	5	77	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MKRGKHRQVL YQYFICRREG VKPDSKKDIS ESSVQKKIRR RKPSTRNGCK ARITTTLNDD 60 GYYVFTSFSE LHNHSLVTED VRHLMKFNRK MDESHQMIML KCAKSNIGPV RAFRIFKELV 120 GSFEEVGCTS KDFKNLSYTM NSYADGVDAQ LLLDSLFWSD AVAVQNSRYL VMRCPLMPRI 180 QRTVHRWLKA ASAEVISTSN MKSRNKSLMA EAFRCIGIAE GNDELADSLL TELKRWAEIN 240 SNGAQCLSPR AESKKCLNYF MLKRRKNQRE DAGNVRLVRH DSRNCGKVVE EESDEE

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3136	2	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-13	FAR1-related sequence 5