PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00023920-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GRAS
Protein Properties Length: 526aa    MW: 58112.5 Da    PI: 5.3329
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00023920-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS392.54.7e-1201455251373
                   GRAS   1 lvelLlecAeavssgdle..........laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseel 78 
                            l++lL++cAe vs+ d            +a++++  ++ ++s +gdp+qRl ay++eAL+arl+ s+s ++k+l+++e s     e +
  SMil_00023920-RA_Salv 145 LKQLLIACAEIVSEADIVpfserkvaasAAETVMDIIQGRVSVSGDPLQRLGAYILEALRARLLLSGSLIFKKLKCNEPS---GPELM 229
                            5799********9976533334445455899999999******************************************9...99999 PP

                   GRAS  79 aalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetger 164
                            + ++l+s+++P+++f++  a   Ilea+++e+r+HiiDf+i qG QW++++qa + Rp+gpp + iTgv+++es+  +   le +g+r
  SMil_00023920-RA_Salv 230 SHMQLLSQICPYYRFAYTSATAVILEAMQNEKRIHIIDFQIAQGSQWLSFIQAVSRRPDGPPYVCITGVDDSESShaRGGGLELVGQR 317
                            ***********************************************************************8888889999******* PP

                   GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnses 252
                            La++Ae++gvpfef+  +a+++ d++le+L+v++gEalaVn+ + lh+++desvs++++rd++L+lvkslsPkv+++veqe+++n++ 
  SMil_00023920-RA_Salv 318 LARLAESCGVPFEFHG-AATSVCDVQLENLKVQHGEALAVNFPYVLHHIPDESVSTSNHRDRLLRLVKSLSPKVMTLVEQESNTNTAA 404
                            ****************.9********************************************************************** PP

                   GRAS 253 Flerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                            F +rf e+l+yy+a+f+s+ +a l+r++++ri+ E++++++++v+++aceg+errerhe ++kW++rl++aGF+++pl+ ++a+ ++ 
  SMil_00023920-RA_Salv 405 FSQRFRETLDYYAAMFESIdAAALARDDKQRINAEEHCVAKDVVSIIACEGDERRERHELFGKWKSRLTMAGFSSIPLNPSVATAVRD 492
                            *******************9999***************************************************************** PP

                   GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                            +l++++ + y + e +g+l++gWk+++Lvs+SaW
  SMil_00023920-RA_Salv 493 MLKEYSPN-YAIAEANGALYIGWKNKALVSFSAW 525
                            ******55.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.173119507IPR005202Transcription factor GRAS
PfamPF035141.6E-117145525IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MQASQEALAC SSAHNSHLLL PSKSQGAELS FQAYAEQFYT LESTPVTDYA VLSSPTAASV  60
SSNKSPFSPQ LSHFYVSDVH HSSDNSSSLN GSFEADDENN WMQSLWMLRN EFMEPECGSV  120
TDESVQPGYS TRYHRIVEMA PNMDLKQLLI ACAEIVSEAD IVPFSERKVA ASAAETVMDI  180
IQGRVSVSGD PLQRLGAYIL EALRARLLLS GSLIFKKLKC NEPSGPELMS HMQLLSQICP  240
YYRFAYTSAT AVILEAMQNE KRIHIIDFQI AQGSQWLSFI QAVSRRPDGP PYVCITGVDD  300
SESSHARGGG LELVGQRLAR LAESCGVPFE FHGAATSVCD VQLENLKVQH GEALAVNFPY  360
VLHHIPDESV STSNHRDRLL RLVKSLSPKV MTLVEQESNT NTAAFSQRFR ETLDYYAAMF  420
ESIDAAALAR DDKQRINAEE HCVAKDVVSI IACEGDERRE RHELFGKWKS RLTMAGFSSI  480
PLNPSVATAV RDMLKEYSPN YAIAEANGAL YIGWKNKALV SFSAWG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-5018952553378Protein SCARECROW
5b3h_A6e-5018952552377Protein SCARECROW
5b3h_D6e-5018952552377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086251.10.0scarecrow-like protein 21
RefseqXP_020551582.10.0scarecrow-like protein 21
SwissprotQ9M0M51e-177SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A291I3050.0A0A291I305_SALMI; GRAS4 transcription factor
STRINGMigut.M01421.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.11e-162SCARECROW-like 13