PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00023897-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 70aa MW: 8073.48 Da PI: 11.2629 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.8 | 4.5e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie++ rq +f+kRrng+lKKA+EL vLCd++va i++ss+gkly yss SMil_00023897-RA_Salv 9 KRIEDNNARQMSFTKRRNGLLKKAKELAVLCDVDVAAIVVSSRGKLYQYSS 59 79***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.058 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.3E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.23E-27 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.1E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 70 aa Download sequence Send to blast |
MGRRKLEIKR IEDNNARQMS FTKRRNGLLK KAKELAVLCD VDVAAIVVSS RGKLYQYSSN 60 NKSFPRKFVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-18 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_B | 1e-18 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_C | 1e-18 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_D | 1e-18 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_A | 1e-18 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_B | 1e-18 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_C | 1e-18 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_D | 1e-18 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011086821.1 | 3e-27 | MADS-box transcription factor 7-like isoform X1 | ||||
Refseq | XP_011086822.1 | 3e-27 | MADS-box transcription factor 7-like isoform X2 | ||||
Refseq | XP_011086823.1 | 3e-27 | MADS-box transcription factor 7-like isoform X3 | ||||
Refseq | XP_020551812.1 | 1e-27 | MADS-box transcription factor 7-like isoform X4 | ||||
Swissprot | Q2QW53 | 3e-23 | MAD13_ORYSJ; MADS-box transcription factor 13 | ||||
TrEMBL | A0A2G9GZR7 | 2e-29 | A0A2G9GZR7_9LAMI; Uncharacterized protein | ||||
STRING | Migut.K00958.1.p | 2e-26 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.2 | 2e-25 | MIKC_MADS family protein |