PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00023774-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB_related | ||||||||
Protein Properties | Length: 102aa MW: 12328 Da PI: 10.3537 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.3 | 9.5e-10 | 18 | 44 | 1 | 28 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIa 28 r rWT+eE+ ++++a k++G W +I SMil_00023774-RA_Salv 18 RERWTEEEHNRFLEALKLYGHA-WQRIE 44 78******************99.**995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.77E-8 | 12 | 47 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.11 | 13 | 62 | IPR017877 | Myb-like domain |
TIGRFAMs | TIGR01557 | 1.6E-8 | 16 | 44 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-6 | 18 | 43 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-7 | 18 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00891 | 20 | 43 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MFILRWQTRK PYTITKQRER WTEEEHNRFL EALKLYGHAW QRIEGLYFLT LPNRNRRTYR 60 NQDYCADKKS CTEVYHKGEW TATGSRPRPA GAKLVSKFSD SL |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3185 | 24 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46830.1 | 2e-19 | circadian clock associated 1 |