PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00023760-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

VOZ

Protein Properties

Length: 521aa MW: 57861.9 Da PI: 6.6449

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00023760-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	398.5	1.5e-122	244	464	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlq...dycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaat 85 pppsaflg kcalwdc+rpa g w q +ycs +ha la eg pg +pv+rp+gi+lkd+llfaal ak+qgk+vgipecegaat SMil_00023760-RA_Salv 244 PPPSAFLGAKCALWDCPRPALGLGWSQepdEYCSVYHAGLAPGEGYPGRAPVVRPGGIGLKDNLLFAALGAKAQGKDVGIPECEGAAT 331 89******************999974446***************************************************** PP VOZ 86 akspwnaa.elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyey 172 +kspwna+ +lfdl++leget+rewlffdkprrafesgnrkqrslpdy+grgwhesrkqvm+efgglkrsyymdpqp+++fewhlyey SMil_00023760-RA_Salv 332 TKSPWNAPvKLFDLTILEGETLREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQVMNEFGGLKRSYYMDPQPMENFEWHLYEY 419 ***867************************************************************************** PP VOZ 173 eineldalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 ein++da+alyrle+k vd+kk++kgk +ds+adlqk+lgrl+a SMil_00023760-RA_Salv 420 EINKYDACALYRLEVKRVDGKKATKGKSGNDSVADLQKQLGRLSA 464 *****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MILATPSPQD SIFCDYVCIF PLKKWIVMFG LVLAAKEFSL AIDLMVKGVK SVACKSASHQ 60 VFKDRAKNRV DDLQAIFSDL QSARKESRTI DVAVLEEQVH QMLREWKAEL NDPSPASSLH 120 QVGSLGFSSD ISRLLQLCEE EDDATSALAP QSQSLMPKRL FMDLLVNSPH EQVFPLVDHC 180 KGTGMGAGNM GMNNNMALAR QLELQSVAVH HELEQQDFTG FSTTSFLGVD RLPQLPGYQQ 240 TIHPPPSAFL GAKCALWDCP RPALGLGWSQ EPDEYCSVYH AGLAPGEGYP GRAPVVRPGG 300 IGLKDNLLFA ALGAKAQGKD VGIPECEGAA TTKSPWNAPV KLFDLTILEG ETLREWLFFD 360 KPRRAFESGN RKQRSLPDYN GRGWHESRKQ VMNEFGGLKR SYYMDPQPME NFEWHLYEYE 420 INKYDACALY RLEVKRVDGK KATKGKSGND SVADLQKQLG RLSAEFPNDK HRVLKLRGKA 480 NVKVDVNGSI YPGPNSLPSP GEGLDFARGA PYDYLVDSYF I

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MILATPSPQD SIFCDYVCIF PLKKWIVMFG LVLAAKEFSL AIDLMVKGVK SVACKSASHQ  60
VFKDRAKNRV DDLQAIFSDL QSARKESRTI DVAVLEEQVH QMLREWKAEL NDPSPASSLH  120
QVGSLGFSSD ISRLLQLCEE EDDATSALAP QSQSLMPKRL FMDLLVNSPH EQVFPLVDHC  180
KGTGMGAGNM GMNNNMALAR QLELQSVAVH HELEQQDFTG FSTTSFLGVD RLPQLPGYQQ  240
TIHPPPSAFL GAKCALWDCP RPALGLGWSQ EPDEYCSVYH AGLAPGEGYP GRAPVVRPGG  300
IGLKDNLLFA ALGAKAQGKD VGIPECEGAA TTKSPWNAPV KLFDLTILEG ETLREWLFFD  360
KPRRAFESGN RKQRSLPDYN GRGWHESRKQ VMNEFGGLKR SYYMDPQPME NFEWHLYEYE  420
INKYDACALY RLEVKRVDGK KATKGKSGND SVADLQKQLG RLSAEFPNDK HRVLKLRGKA  480
NVKVDVNGSI YPGPNSLPSP GEGLDFARGA PYDYLVDSYF I

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086029.1	0.0	transcription factor VOZ1-like isoform X2
Swissprot	Q9SGQ0	0.0	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A4D8ZHY0	0.0	A0A4D8ZHY0_SALSN; Uncharacterized protein
STRING	Migut.M01093.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2818	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	0.0	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]