PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00023747-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 246aa MW: 27685.6 Da PI: 6.6873 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 68.2 | 2.1e-21 | 57 | 138 | 9 | 90 |
FAR1 9 evGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +vGF vr+ + ++s+ +g++ r++ C+k+g++ ++k e+++r++ r gCka++ k+ek+gkw+vt++++eHnH+l+ SMil_00023747-RA_Salv 57 HVGFVVRVMQRRRSEIDGRTLARRLGCNKQGFSPNTKGMIGPEKKPRPSAREGCKATILFKLEKSGKWVVTRFVKEHNHPLV 138 58***********************************999****************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.6E-19 | 58 | 138 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 246 aa Download sequence Send to blast |
MLHVLRMDLV ASTVVEAAAG DSDKEDLNSR DSDEDDLAEA EEEKTWSGEG GEVVEPHVGF 60 VVRVMQRRRS EIDGRTLARR LGCNKQGFSP NTKGMIGPEK KPRPSAREGC KATILFKLEK 120 SGKWVVTRFV KEHNHPLVVT AQEDTNVVRP TPSSTHIYQL FQQKLPVLII RSRMQLDKDK 180 RIQELARELQ RQEELCAAYR ERLINLLSTI ESQADQMSSK VLAVVESVKK AEAEALTEAL 240 TIPLDK |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012833525.1 | 3e-92 | PREDICTED: protein FAR1-RELATED SEQUENCE 12 | ||||
TrEMBL | A0A4D8ZVZ8 | 1e-117 | A0A4D8ZVZ8_SALSN; Uncharacterized protein | ||||
STRING | Migut.N00673.1.p | 4e-92 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11602 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G12850.1 | 1e-36 | FAR1 family protein |