PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00023725-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 314aa    MW: 35236.8 Da    PI: 8.5381
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00023725-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.7e-181259148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT++Edell +++ q G g+W++++++ g++R++k+c++rw +yl
  SMil_00023725-RA_Salv 12 KGPWTPQEDELLFQYISQNGEGRWSSVSKCTGLKRSGKSCRLRWVNYL 59
                           79********************************************97 PP
2Myb_DNA-binding50.83.9e-1665109147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +g  T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++
  SMil_00023725-RA_Salv  65 KGQLTPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 109
                            5778******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.9121159IPR017930Myb domain
SuperFamilySSF466894.87E-2911106IPR009057Homeodomain-like
SMARTSM007177.4E-161161IPR001005SANT/Myb domain
PfamPF002492.1E-161259IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-221366IPR009057Homeodomain-like
CDDcd001672.62E-121459No hitNo description
PROSITE profilePS5129424.9460114IPR017930Myb domain
SMARTSM007172.2E-1364112IPR001005SANT/Myb domain
PfamPF002494.1E-1465109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2367112IPR009057Homeodomain-like
CDDcd001671.16E-1069110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEQGAAAGWW RKGPWTPQED ELLFQYISQN GEGRWSSVSK CTGLKRSGKS CRLRWVNYLR  60
PDLKKGQLTP QEEGIIIELH ALWGNKWSTI ARYLPGRTDN EIKNYWRTHF KTRSPSTHLK  120
KRKILNQQQA HRRPNNVTIT EPSHSHDKEM AFSSIIDINH QSVSSSDDFV APFEMDCYLW  180
NLDDDHHLPN LMPHEYYHPF EGDAAVDYYV QTAEITASEV AGYAVGALLL SATISAPKID  240
SLISSSQRSS LGMCKRCGDV NRIACRKCKG SGLIKQGGPF TLIPVVTDKS TSVSCSNCRG  300
RGCFSCPGCS PNQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-24121137107B-MYB
1h8a_C6e-241211327127MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593660.0KF059366.1 Salvia miltiorrhiza MYB-related transcription factor (MYB12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065503.11e-66myb-related protein 340
RefseqXP_021657306.11e-66transcription factor WER-like
RefseqXP_021690918.11e-66transcription factor WER-like
RefseqXP_021690919.11e-66transcription factor WER-like
TrEMBLA0A059PRP31e-162A0A059PRP3_SALMI; MYB-related transcription factor
STRINGSolyc02g089190.1.12e-65(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.14e-62myb domain protein 121