PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00023609-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GRAS
Protein Properties Length: 647aa    MW: 70502.4 Da    PI: 6.1129
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00023609-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS414.59.6e-1272856402374
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                             +lLl+cAeavs ++le+a+++L ++s+ a+p g++ qR+aayf eA++ar+++s+ ++y+alp+ +      ++ ++a+++f+ +sP
  SMil_00023609-RA_Salv 285 LTLLLQCAEAVSGDNLEEANRMLLEISQVATPFGTSAQRVAAYFSEAMSARIVSSCLGIYAALPTVPH----GQKLASAFQVFNGISP 368
                            579************************************************************99999....589999********** PP

                   GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                            ++kfsh+taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g+    s+e+l++tg+rL++fA++lg+pfe
  SMil_00023609-RA_Salv 369 FVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGN----STEALQATGKRLSDFADKLGLPFE 452
                            ************************************************************....9*********************** PP

                   GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                            f +  a+++ +l++e+L+++++Ea+aV++    h+l+d ++s ++    +L l+++lsPkvv+vveq+++h ++sFl rf+ea++yys
  SMil_00023609-RA_Salv 453 FCP-FADKVGNLNPEKLNISKREAVAVHWLQ--HSLYDVTGSDAN----TLGLLQRLSPKVVTVVEQDLSH-AGSFLGRFVEAIHYYS 532
                            ***.6*************************9..999999999999....**********************.899************* PP

                   GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353
                            alfdsl a +++eseer++vE++ll+rei+nv++  g +r  + + +++Wre+le++GFk ++l  +aa+qa lll +++sdgy++ e
  SMil_00023609-RA_Salv 533 ALFDSLGACYGEESEERHVVEQQLLSREIRNVLSVGGPSRSGEVK-FNNWREKLEQSGFKGISLAGNAAAQATLLLGMFPSDGYTLVE 619
                            ***************************************888776.****************************************** PP

                   GRAS 354 esgslvlgWkdrpLvsvSaWr 374
                            ++g+l lgWkd  L+++SaWr
  SMil_00023609-RA_Salv 620 DNGALKLGWKDLCLLTASAWR 640
                            ********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.23258620IPR005202Transcription factor GRAS
PfamPF035143.3E-124285640IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MAAKAFGLVG EGESCGGEEV GLMSVQGQGG SKLVRKRAAS EMEFHGGGRL ISRRTGSSDY  60
SSAVNVGPNP IPNYSTSTSM TMVAPSSASA NILSNFIDCQ ESEPSVCVFS GLPLFPPDRN  120
KQSPMEDTAA SAWIDGIIRD LIHSSNHVSI PQLILNVREI IHPCNPNLAA LLEQRLRSLD  180
DTHTHSHRRR KGSSLNTTTN NNNLLLSQSQ GFSADPLNDL FLLHNTTTTS FVEHAPPPET  240
TTQPQEQQQQ QKSPSTSPST TLESIRERKQ EMRQQQKDEQ GLHLLTLLLQ CAEAVSGDNL  300
EEANRMLLEI SQVATPFGTS AQRVAAYFSE AMSARIVSSC LGIYAALPTV PHGQKLASAF  360
QVFNGISPFV KFSHFTANQA IQEAFEREDR VHIIDLDIMQ GLQWPGLFHI LASRPGGPPF  420
VRLTGLGNST EALQATGKRL SDFADKLGLP FEFCPFADKV GNLNPEKLNI SKREAVAVHW  480
LQHSLYDVTG SDANTLGLLQ RLSPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA  540
CYGEESEERH VVEQQLLSRE IRNVLSVGGP SRSGEVKFNN WREKLEQSGF KGISLAGNAA  600
AQATLLLGMF PSDGYTLVED NGALKLGWKD LCLLTASAWR PSPLLIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.02686413380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101980.10.0protein SCARECROW
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A4D8Y7G50.0A0A4D8Y7G5_SALSN; Uncharacterized protein
STRINGMigut.J00002.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA82582430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein