PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00023539-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 458aa MW: 49132.2 Da PI: 6.5278

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00023539-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.7	6.6e-06	347	385	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L SMil_00023539-RA_Salv 347 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 385 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.894	336	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.27E-11	346	400	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.15E-7	346	390	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.9E-10	346	396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0019	347	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MADEFQLGNG SWWDTTRNRF ESGTSPASSS ISTTLNAIAS FGWSTEMVDM KSSRSTMESA 60 TASTAATMVC HDDQSSAGGG GGGGGGGGGG VLSTPSLQMM GLGLSSQSMD WNQALLNEKG 120 ESSFRSLLQE DLSSNNGSFQ PESAASSQEQ WRQKLFSGAS SENEFKQINR GFSLDQPQFS 180 SQASSNDSTI TSQSLTTAFQ VDSAAAYGLL LSENQQHSNY QNRAISNYPY PPAAGGYGGN 240 AAEMIPSMNK YPPFLRTSPP KQPQAASNHL HFTNNTPFWN ASAPPAAMSD ARSSFFPPLQ 300 NQIPAAPPFD AKPKNKAEGR DAKKNSAETT NKRARSETPS ALPAFKVRKE KMGDRITALQ 360 QLVSPFGKTD TASVLSEAIE YIKFLHEQVS ALSAPYMKNG APMQNQQSIN PEKSKDLEGG 420 RQDLRSRGLC LVPVSSTFPV THETAVDFWT PTFGGTFR

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MADEFQLGNG SWWDTTRNRF ESGTSPASSS ISTTLNAIAS FGWSTEMVDM KSSRSTMESA  60
TASTAATMVC HDDQSSAGGG GGGGGGGGGG VLSTPSLQMM GLGLSSQSMD WNQALLNEKG  120
ESSFRSLLQE DLSSNNGSFQ PESAASSQEQ WRQKLFSGAS SENEFKQINR GFSLDQPQFS  180
SQASSNDSTI TSQSLTTAFQ VDSAAAYGLL LSENQQHSNY QNRAISNYPY PPAAGGYGGN  240
AAEMIPSMNK YPPFLRTSPP KQPQAASNHL HFTNNTPFWN ASAPPAAMSD ARSSFFPPLQ  300
NQIPAAPPFD AKPKNKAEGR DAKKNSAETT NKRARSETPS ALPAFKVRKE KMGDRITALQ  360
QLVSPFGKTD TASVLSEAIE YIKFLHEQVS ALSAPYMKNG APMQNQQSIN PEKSKDLEGG  420
RQDLRSRGLC LVPVSSTFPV THETAVDFWT PTFGGTFR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020553877.1	0.0	transcription factor bHLH123
Swissprot	Q8GXT3	3e-78	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A2Z7DA36	0.0	A0A2Z7DA36_9LAMI; Basic helix-loop-helix DNA-binding superfamily protein
STRING	VIT_19s0014g04670.t01	1e-177	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	3e-77	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]