PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00023510-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 261aa    MW: 28862.6 Da    PI: 9.038
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00023510-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-1889138356
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                            y+GVr+++ +g+WvAeIr p +   r r++lg+++++e Aa a+++a+ kl+ge
  SMil_00023510-RA_Salv  89 YRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDSPEAAAYAYDRAAYKLRGE 138
                            9******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.5E-3088146IPR001471AP2/ERF domain
SMARTSM003801.2E-3488151IPR001471AP2/ERF domain
PROSITE profilePS5103223.11788145IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-2288146IPR016177DNA-binding domain
PRINTSPR003671.3E-1289100IPR001471AP2/ERF domain
PfamPF008474.8E-1389138IPR001471AP2/ERF domain
CDDcd000185.18E-2089147No hitNo description
PRINTSPR003671.3E-12127147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MSTTHQNTPF FTGNDDADIG LCLSQLILNS NSNTLDSIFS KCYEPGPATG PVLEPLGSSV  60
YLRQRDLINQ FSAVNSRSAL SGPRNGKMYR GVRQRHWGKW VAEIRLPQNR MRVWLGTYDS  120
PEAAAYAYDR AAYKLRGEYA RLNFPNLRDP AGLGLADGPR LDALRSAVDA KIEAVWQKVK  180
REKKARRAAR KLEGKRSESE SGSGVKKADS SESWRASVSG DGLWSGVELP VAAVEEPEMD  240
GCLLARLPSY DLDLIWEVLA T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-1986145363ATERF1
3gcc_A8e-1986145363ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1042842e-46AC104284.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1735_C10, complete sequence.
GenBankAP0149612e-46AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126132e-46CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8376112e-46CT837611.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA042N08, full insert sequence.
GenBankCT8416872e-46CT841687.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C102K07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101035.11e-95LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF061
SwissprotQ9C7W21e-48ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A4D9A8841e-108A0A4D9A884_SALSN; EREBP-like factor
STRINGXP_006439361.11e-78(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36012345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.12e-43ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]