PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00023477-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | LBD | ||||||||
Protein Properties | Length: 156aa MW: 17333.7 Da PI: 7.8152 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 119.1 | 2.6e-37 | 16 | 115 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 aCaaCk++rr+Ca+dC+lapyf a+++++fanvh+lFG ++v+kll+++ + +r+da++s+vyeA+ ra Pv G++g +l++q++ SMil_00023477-RA_Salv 16 ACAACKHQRRRCAADCPLAPYFSADRQSDFANVHRLFGIKKVSKLLQSVAPRHRDDAAKSIVYEANLRAMHPVAGCFGAAAELRRQIQ 103 7*************************************************************************************** PP DUF260 89 qlkaelallkee 100 +ael+ + ++ SMil_00023477-RA_Salv 104 ICEAELEIVSQN 115 ******999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.471 | 15 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-36 | 16 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MGTPEPPPPL PPAKSACAAC KHQRRRCAAD CPLAPYFSAD RQSDFANVHR LFGIKKVSKL 60 LQSVAPRHRD DAAKSIVYEA NLRAMHPVAG CFGAAAELRR QIQICEAELE IVSQNLAFLK 120 QNNSFVVNNQ ETDFQIEENS NLQQFFNDLK PALADQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-26 | 8 | 116 | 3 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-26 | 8 | 116 | 3 | 111 | LOB family transfactor Ramosa2.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1U8HFD1 | 2e-33 | A0A1U8HFD1_CAPAN; LOB domain-containing protein 22-like | ||||
TrEMBL | A0A2G2W5Z8 | 8e-33 | A0A2G2W5Z8_CAPBA; Uncharacterized protein | ||||
TrEMBL | A0A2G2YWR1 | 2e-33 | A0A2G2YWR1_CAPAN; LOB domain-containing protein 22 (Fragment) | ||||
STRING | XP_010262241.1 | 9e-33 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2866 | 17 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 2e-35 | LOB domain-containing protein 22 |