PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00023476-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | LBD | ||||||||
Protein Properties | Length: 235aa MW: 26777.6 Da PI: 4.2331 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 104.3 | 1.1e-32 | 19 | 119 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaC ++ C++dC lapyfpae+++++ nvh+lFG+++v+++l+a++++ r+da++s++yeA+ ra Pv G+++ il+l q++ SMil_00023476-RA_Salv 19 SCAACWLMHLPCPDDCLLAPYFPAERAADYVNVHRLFGRQKVINILNAVKPHLRDDAITSITYEANFRAAHPVGGCTAAILALVAQIN 106 6*************************************************************************************** PP DUF260 89 qlkaelallkeel 101 l a+l++++++l SMil_00023476-RA_Salv 107 YLTAQLDAVRQQL 119 *********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.233 | 18 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.6E-31 | 19 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MSSPPPLPPL PPGRRRKRSC AACWLMHLPC PDDCLLAPYF PAERAADYVN VHRLFGRQKV 60 INILNAVKPH LRDDAITSIT YEANFRAAHP VGGCTAAILA LVAQINYLTA QLDAVRQQLD 120 QNLNQYPRFL NLDQEIPEDA PQFFDAGDNQ INNPIVLNGD HQQIEEDDQQ QFFNGGDNQM 180 NPIVLNGDHQ QIEEDDQQQF FNGDNQNPVS LNHDQEFLED LQRYFNFNLN DDNDQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-22 | 20 | 119 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-22 | 20 | 119 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2866 | 17 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 5e-25 | LOB domain-containing protein 25 |