PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00023438-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 267aa MW: 28866.4 Da PI: 8.7487 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.3 | 4.2e-18 | 183 | 217 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C++ kTp+WR gp g+ktLCnaCG++y++ +l SMil_00023438-RA_Salv 183 CLHCHAEKTPQWRAGPMGPKTLCNACGVRYKSGRL 217 99*****************************9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 6.2E-18 | 177 | 231 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.991 | 177 | 213 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.76E-15 | 179 | 240 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.6E-14 | 180 | 215 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.03E-12 | 182 | 232 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 183 | 208 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 9.4E-16 | 183 | 217 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 267 aa Download sequence Send to blast |
LNFNLEGEGE GEEKDLTIFK ASSSSLETPN PAAAAAAFGR GALSGPFHEF VEEEELEWLS 60 NKDAFPSVET CFGILADNPE LVMNHQSPVS VLENSSSSSH SNSNSNSNGG SIASCCNSLK 120 VPTNYPVRAR SKRRRRRGGY GDLPSQQSLW LNPVSVKSKK EVSFTLPPLP TITSSGAGMG 180 RRCLHCHAEK TPQWRAGPMG PKTLCNACGV RYKSGRLLPE YRPASSPTFS SVLHSNSHRK 240 VVEMRKQKQG PEGEGMPVNV SCGYRLG |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 131 | 136 | KRRRRR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00377 | DAP | Transfer from AT3G24050 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011073745.1 | 1e-109 | GATA transcription factor 1-like | ||||
Swissprot | Q8LAU9 | 3e-49 | GATA1_ARATH; GATA transcription factor 1 | ||||
TrEMBL | A0A4D8Y7C9 | 1e-108 | A0A4D8Y7C9_SALSN; Uncharacterized protein | ||||
STRING | XP_009767386.1 | 5e-84 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4076 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24050.1 | 2e-42 | GATA transcription factor 1 |