PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00023438-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GATA
Protein Properties Length: 267aa    MW: 28866.4 Da    PI: 8.7487
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00023438-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.34.2e-18183217135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C +C++ kTp+WR gp g+ktLCnaCG++y++ +l
  SMil_00023438-RA_Salv 183 CLHCHAEKTPQWRAGPMGPKTLCNACGVRYKSGRL 217
                            99*****************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.2E-18177231IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.991177213IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.76E-15179240No hitNo description
Gene3DG3DSA:3.30.50.101.6E-14180215IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.03E-12182232No hitNo description
PROSITE patternPS003440183208IPR000679Zinc finger, GATA-type
PfamPF003209.4E-16183217IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
LNFNLEGEGE GEEKDLTIFK ASSSSLETPN PAAAAAAFGR GALSGPFHEF VEEEELEWLS  60
NKDAFPSVET CFGILADNPE LVMNHQSPVS VLENSSSSSH SNSNSNSNGG SIASCCNSLK  120
VPTNYPVRAR SKRRRRRGGY GDLPSQQSLW LNPVSVKSKK EVSFTLPPLP TITSSGAGMG  180
RRCLHCHAEK TPQWRAGPMG PKTLCNACGV RYKSGRLLPE YRPASSPTFS SVLHSNSHRK  240
VVEMRKQKQG PEGEGMPVNV SCGYRLG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131136KRRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073745.11e-109GATA transcription factor 1-like
SwissprotQ8LAU93e-49GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A4D8Y7C91e-108A0A4D8Y7C9_SALSN; Uncharacterized protein
STRINGXP_009767386.15e-84(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.12e-42GATA transcription factor 1