PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00023218-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 120aa    MW: 12676.8 Da    PI: 10.1353
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00023218-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.2e-164795347
                           SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqky 47
                           ++++eEd  +++a++ +G+      +W+tIar ++ gRt++ +k++w++ 
  SMil_00023218-RA_Salv 47 PFSAEEDAVILHAHAAHGNSnfvdpRWATIARLLP-GRTDNAVKNHWNST 95
                           79*****************9***************.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.45740100IPR017930Myb domain
SuperFamilySSF466894.56E-1443101IPR009057Homeodomain-like
SMARTSM007173.8E-124498IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-184797IPR009057Homeodomain-like
PfamPF002493.8E-134795IPR001005SANT/Myb domain
CDDcd001676.38E-124796No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MCASSLRLMP TTPPLTTWRS TVPATAPSSA PASRADRACG GATNSAPFSA EEDAVILHAH  60
AAHGNSNFVD PRWATIARLL PGRTDNAVKN HWNSTLRRKR NAQCSLEQSS YGGGEKGXGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mbj_A4e-164899651MYB PROTO-ONCOGENE PROTEIN
1mbk_A4e-164899651MYB PROTO-ONCOGENE PROTEIN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019262180.14e-21PREDICTED: myb protein-like
RefseqXP_022863326.13e-21transcription factor MYB1-like
TrEMBLA0A314L8L39e-20A0A314L8L3_NICAT; Transcription factor myb44
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.16e-19myb domain protein 109