PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00023209-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family CO-like
Protein Properties Length: 375aa    MW: 41847.8 Da    PI: 9.0833
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00023209-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.46.8e-091042335
               zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                            r C+++ +k+++++C  ++ +lC+ C ++ H+
  SMil_00023209-RA_Salv 10 VRACDNCVRKRARWYCAADDAFLCDACDSSVHS 42
                           578***************************995 PP
2CCT68.32.1e-23320363144
                    CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                            Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  SMil_00023209-RA_Salv 320 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 363
                            9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.6E-4854IPR000315B-box-type zinc finger
PROSITE profilePS501199.485841IPR000315B-box-type zinc finger
CDDcd000211.90E-81143No hitNo description
PfamPF006436.6E-71142IPR000315B-box-type zinc finger
PfamPF062036.0E-18320362IPR010402CCT domain
PROSITE profilePS5101716.083320362IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MVSDTTQKSV RACDNCVRKR ARWYCAADDA FLCDACDSSV HSANPSRADT RGFASRLPHR  60
HRPRKITRFH SPWTRMIRGR APCTRPRGTR VSRGKLEPRG ARRKAAAAAT TTTAKAGESH  120
ERYYDSAASG AGGGDLQRGG ERGAAALWVP FAADVESLLG KGLEDEAFDI EGLGIFDDVE  180
VRIKAEEDEE IGAAAEAEAE EGNHHHHHHH LLQIELGRET FELNFDYASP FTCDEEDNKM  240
KIIGDKDDSS KAEAAAALLK LDYDRVMSAW DHKKSPWMSG ERPEFTSGDW WPHHCCSGTS  300
GAMHAYGEAA MRAAVGDGGR EARVSRYREK RRTRLFSKKI RYEVRKLNAE KRPRMKGRFV  360
KRASFAASAF PLLNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1330346RRTRLFSKKIRYEVRKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9863311e-36KF986331.1 Lagerstroemia indica zinc finger protein CONSTANS-LIKE 5 (COL5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547025.12e-92zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A4D9BQF91e-108A0A4D9BQF9_SALSN; Uncharacterized protein
STRINGVIT_01s0011g03520.t013e-84(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-32B-box type zinc finger protein with CCT domain