PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00023201-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 174aa    MW: 19774.7 Da    PI: 10.5114
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00023201-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-182979155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                           + y+GVr +  +++Wv+e+r+p     r  kr++lg++ t+e+Aa+a++ a+++l+g
  SMil_00023201-RA_Salv 29 PVYRGVRLRN-SNKWVCELREP-----RhqKRVWLGTYPTPEMAARAHDLAALALRG 79
                           68*****999.7*********8.....447*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-142979IPR001471AP2/ERF domain
SMARTSM003807.6E-253093IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-203089IPR016177DNA-binding domain
PROSITE profilePS5103221.0223087IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-283089IPR001471AP2/ERF domain
PRINTSPR003673.0E-73142IPR001471AP2/ERF domain
CDDcd000184.86E-253189No hitNo description
PRINTSPR003673.0E-75369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MPNSEFHETT TSHSKRRDGR KKFKVTRHPV YRGVRLRNSN KWVCELREPR HQKRVWLGTY  60
PTPEMAARAH DLAALALRGS AACLNFADSA WRLPLPSSKD AKDLRKAAAA AAEAFRPRPR  120
EEACLKRRID IFEVSGVVGL AEAVLMSPPP LLGWRFSWDE VESVAEVDLA LWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1428861271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012835461.17e-72PREDICTED: dehydration-responsive element-binding protein 1E-like
SwissprotQ9SGJ61e-51DRE1E_ARATH; Dehydration-responsive element-binding protein 1E
TrEMBLA0A4D8Y8922e-83A0A4D8Y892_SALSN; EREBP-like factor
STRINGMigut.A00920.1.p3e-71(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63030.21e-37ERF family protein