PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00023076-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Dof

Protein Properties

Length: 325aa MW: 35893.2 Da PI: 8.7304

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00023076-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.3	3.9e-39	113	172	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk++ SMil_00023076-RA_Salv 113 PDKILPCPRCNSADTKFCYYNNYNIKQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKTA 172 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-29	110	170	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-32	115	171	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.584	117	171	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	119	155	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
LVLRLTNPWR GMKEPEIKLF GRKIVLPDKG GAVAAGEFSG RSSCVSDGDD RCLEASGEKG 60 EAHHEIQLHA LEEHQEAEEC ESRDENAEEP RNPAAESSEM DENGQQKAAL KKPDKILPCP 120 RCNSADTKFC YYNNYNIKQP RHFCKSCQRY WTAGGTMRNV PVGAGRRKNK TAATSPPPRP 180 IWRRFRAVVR PRSRAHQEIR RAHQEWRAAA AAAAAATRDA VPYDPLESGN LPDADAGKHS 240 RSGDEVDKGR SILVPKTLRI DDPEEAAKSS IWETLGIKYD SVSREGLFKA LQPKPGREKI 300 SISAASALQA NPAAFSRSIS FQEGV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A4D8ZXT2	2e-84	A0A4D8ZXT2_SALSN; Dof zinc finger protein DOF5.5

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	4e-38	cycling DOF factor 2