PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00023076-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | Dof | ||||||||
Protein Properties | Length: 325aa MW: 35893.2 Da PI: 8.7304 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.3 | 3.9e-39 | 113 | 172 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk++ SMil_00023076-RA_Salv 113 PDKILPCPRCNSADTKFCYYNNYNIKQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKTA 172 7899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-29 | 110 | 170 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.5E-32 | 115 | 171 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.584 | 117 | 171 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 119 | 155 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
LVLRLTNPWR GMKEPEIKLF GRKIVLPDKG GAVAAGEFSG RSSCVSDGDD RCLEASGEKG 60 EAHHEIQLHA LEEHQEAEEC ESRDENAEEP RNPAAESSEM DENGQQKAAL KKPDKILPCP 120 RCNSADTKFC YYNNYNIKQP RHFCKSCQRY WTAGGTMRNV PVGAGRRKNK TAATSPPPRP 180 IWRRFRAVVR PRSRAHQEIR RAHQEWRAAA AAAAAATRDA VPYDPLESGN LPDADAGKHS 240 RSGDEVDKGR SILVPKTLRI DDPEEAAKSS IWETLGIKYD SVSREGLFKA LQPKPGREKI 300 SISAASALQA NPAAFSRSIS FQEGV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A4D8ZXT2 | 2e-84 | A0A4D8ZXT2_SALSN; Dof zinc finger protein DOF5.5 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA532 | 24 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 4e-38 | cycling DOF factor 2 |