PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00023074-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | GATA | ||||||||
Protein Properties | Length: 259aa MW: 27661.7 Da PI: 9.8989 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.5 | 2.4e-20 | 166 | 199 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp+g+k+LCnaCG++yrkk+ SMil_00023074-RA_Salv 166 CSDCRTTKTPLWRSGPSGPKSLCNACGIRYRKKR 199 ********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.0E-19 | 160 | 211 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.55E-14 | 161 | 209 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.0E-16 | 162 | 205 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 166 | 191 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.2E-18 | 166 | 199 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.34E-14 | 166 | 217 | No hit | No description |
PROSITE profile | PS50114 | 13.455 | 166 | 219 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
CPNFRVVGRR GRRAGGRKKL WNFPLIPFPF SPSRWAARFA GASRQPCLPA CALTVTLLPE 60 NRRGITVKSP SRGRLPRVSG DPSSEYHSSG ESGFSGESGS SDKGDSSGEC DSSGECDFSG 120 ECPLASVIPL ASVIPLARAI SLLPVIPLEE GLSSEETNGA EIKKCCSDCR TTKTPLWRSG 180 PSGPKSLCNA CGIRYRKKRP AAAATVKNDG KKGKIGKTRR NLMPLGQEVE VVERSPREWG 240 EVERAALLLM ALSCGAVFA |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12750 | 17 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 9e-27 | GATA transcription factor 16 |