PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00022980-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 23153.5 Da PI: 4.4549 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.3 | 3.8e-18 | 29 | 79 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr +k +g++v+eIr p + + r++lg+++tae+Aa+a +aa +l+g SMil_00022980-RA_Salv 29 CKYKGVRKRK-WGKYVSEIRLP---N-CrERIWLGSYDTAEKAARAFDAALYCLRG 79 79*****999.**********8...3.45*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.7E-10 | 29 | 79 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.64E-29 | 29 | 89 | No hit | No description |
SuperFamily | SSF54171 | 1.05E-19 | 30 | 88 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-28 | 30 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-31 | 30 | 93 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.982 | 30 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-9 | 31 | 42 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-9 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MVKSPEKQHQ PSSAAALEVV REASSSSSCK YKGVRKRKWG KYVSEIRLPN CRERIWLGSY 60 DTAEKAARAF DAALYCLRGG NAKFNFPDNP PEIENGRSMT PAEIQVAAAR FAHAAAGAET 120 SGRVDDLDSQ SDSSEALQHA ESPCPSVSDM TNIPLDNVFL DQFLTLSTDN NISDFGLFPG 180 FDDLSGDFLA PPDYYWPDNT DELSSQLWNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-16 | 25 | 87 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 31 | 37 | KGVRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00151 | DAP | Transfer from AT1G19210 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093871.1 | 5e-97 | ethylene-responsive transcription factor ERF017-like | ||||
Swissprot | Q84QC2 | 5e-57 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A4D9BIA3 | 1e-102 | A0A4D9BIA3_SALSN; Uncharacterized protein | ||||
STRING | Migut.L01585.1.p | 3e-73 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1939 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 9e-54 | ERF family protein |
Publications ? help Back to Top | |||
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