PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00022979-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 157aa    MW: 17321.2 Da    PI: 6.5396
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00022979-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62.1e-201463255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           +ykGVr +k +g+WvAe+r p++   r r++lg+++taeeAa+a++aa  +l+g
  SMil_00022979-RA_Salv 14 RYKGVRMRK-WGKWVAEVRQPNS---RDRIWLGSYDTAEEAARAYDAAVFCLRG 63
                           69*****99.*******888732...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.76E-291473No hitNo description
Gene3DG3DSA:3.30.730.102.0E-311472IPR001471AP2/ERF domain
PROSITE profilePS5103223.5781471IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-231472IPR016177DNA-binding domain
SMARTSM003801.4E-371477IPR001471AP2/ERF domain
PfamPF008471.0E-141463IPR001471AP2/ERF domain
PRINTSPR003672.8E-101526IPR001471AP2/ERF domain
PRINTSPR003672.8E-103753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MVRPQPRRQR SDGRYKGVRM RKWGKWVAEV RQPNSRDRIW LGSYDTAEEA ARAYDAAVFC  60
LRGPSAALNF PHDPPDILAA DELSPSQIQV AASKHARRLA AQPVVENFFF GEAAGASSFG  120
EFRVGEGILA AEEGERGGDG ADDGGSVFFD TSRMWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1913731374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012851158.17e-59PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ9C5915e-36ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLA0A4D9A7L41e-59A0A4D9A7L4_SALSN; EREBP-like factor
STRINGXP_009620960.12e-53(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.12e-27ERF family protein