PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00022968-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Nin-like

Protein Properties

Length: 776aa MW: 88737.5 Da PI: 8.5362

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00022968-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	49.8	6.9e-16	697	742	3	48
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 k +s+e++s+yF +pi++A+ +Lg++ L r+CR++ I+RWPh k SMil_00022968-RA_Salv 697 KPLSMEMISQYFGMPIAQASAKLGIGRQRLNRRCRELKIPRWPHTK 742 6699***************************************966 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03469	1.1E-18	180	291	IPR005379	Uncharacterised domain XH
Pfam	PF03470	4.2E-5	351	389	IPR005381	Zinc finger-XS domain
Pfam	PF03469	1.5E-32	535	654	IPR005379	Uncharacterised domain XH
PROSITE profile	PS51519	13.628	682	766	IPR003035	RWP-RK domain
Pfam	PF02042	8.7E-14	699	742	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0031047	Biological Process	gene silencing by RNA

Sequence ? help Back to Top
Protein Sequence Length: 776 aa Download sequence Send to blast
MGSSRVDVEM GNSSREEFED LNDDSQMNEY KQLSYKLFHF QTYRLVRGSN GEFGCPFCSY 60 KECRYTHLLL HAVQVAEGHE PGKKRANHYA MARYLAIDLA HQLKAEADQL SWSSEDGKLM 120 TKGEIDKVRI HQLERKVNEL IAKVRQSSDE LQGVRTELIK GLNDIPRGNN DEIGIRFIQE 180 IDTKVLVTKM EKKGLSSISA AEKGDELRLV WQEILKNPEW YPYQIIQDAN GKRKIALKED 240 DPSLKDLKKR WCQEIHDAVV EALNASELWN LKENRKAKLD EVISYILEAL RVRDVSKTGT 300 TSGTNTSRIK EHSEINNSHE EFDIAEHKDK TYKLLKSCTY QVRGPCGQLR CPFCSVEEDR 360 NYSHLLRHAF MVAEDSSESA EQRATHLALL KYLVIDLQHN AAEPPPQSTR PAPSGEDDLE 420 IVEETRQVDT KRKRQRVGDD TNALQLKNLL KQIQDSHFSY QNLAAREQKS NAKLKGAWNE 480 VIKVGQRVII SSVFPLLPYL AVTCTTGHGN YSKSKGGLQG LNDIQIGNNA GIGVKQIGEL 540 DVDVFKRACG DTKGGVELCS TWQEKLKDPQ WRPFWNIEDD TGNLKEVVDE EDETLRGLKH 600 DWGDEVYNAI VTALKELHEH SPGRCNTGAQ IWNLKENRKA ELDQVIRYVF TQLMPQNGKR 660 RASTRAQRGT MKDDENWEVE KVKKVVKRRL GRYKNPKPLS MEMISQYFGM PIAQASAKLG 720 IGRQRLNRRC RELKIPRWPH TKKLGLEIRN KNVPNSGSDS DTDDHIPLSR KYALKK

Sequence ? help Back to Top

Protein Sequence Length: 776 aa Download sequence Send to blast

MGSSRVDVEM GNSSREEFED LNDDSQMNEY KQLSYKLFHF QTYRLVRGSN GEFGCPFCSY  60
KECRYTHLLL HAVQVAEGHE PGKKRANHYA MARYLAIDLA HQLKAEADQL SWSSEDGKLM  120
TKGEIDKVRI HQLERKVNEL IAKVRQSSDE LQGVRTELIK GLNDIPRGNN DEIGIRFIQE  180
IDTKVLVTKM EKKGLSSISA AEKGDELRLV WQEILKNPEW YPYQIIQDAN GKRKIALKED  240
DPSLKDLKKR WCQEIHDAVV EALNASELWN LKENRKAKLD EVISYILEAL RVRDVSKTGT  300
TSGTNTSRIK EHSEINNSHE EFDIAEHKDK TYKLLKSCTY QVRGPCGQLR CPFCSVEEDR  360
NYSHLLRHAF MVAEDSSESA EQRATHLALL KYLVIDLQHN AAEPPPQSTR PAPSGEDDLE  420
IVEETRQVDT KRKRQRVGDD TNALQLKNLL KQIQDSHFSY QNLAAREQKS NAKLKGAWNE  480
VIKVGQRVII SSVFPLLPYL AVTCTTGHGN YSKSKGGLQG LNDIQIGNNA GIGVKQIGEL  540
DVDVFKRACG DTKGGVELCS TWQEKLKDPQ WRPFWNIEDD TGNLKEVVDE EDETLRGLKH  600
DWGDEVYNAI VTALKELHEH SPGRCNTGAQ IWNLKENRKA ELDQVIRYVF TQLMPQNGKR  660
RASTRAQRGT MKDDENWEVE KVKKVVKRRL GRYKNPKPLS MEMISQYFGM PIAQASAKLG  720
IGRQRLNRRC RELKIPRWPH TKKLGLEIRN KNVPNSGSDS DTDDHIPLSR KYALKK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	430	435	KRKRQR
2	682	689	KKVVKRRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G9GG16	3e-36	A0A2G9GG16_9LAMI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	2e-12	RWP-RK domain-containing protein