PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00022871-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | Dof | ||||||||
Protein Properties | Length: 216aa MW: 24071.9 Da PI: 9.4482 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.6 | 3.3e-39 | 23 | 84 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ke+alkcprC+stntkfCyynnyslsqPryfCk+CrryWt+GG lrnvPvGg++rknk+sss SMil_00022871-RA_Salv 23 KEQALKCPRCKSTNTKFCYYNNYSLSQPRYFCKSCRRYWTEGGNLRNVPVGGSSRKNKRSSS 84 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-24 | 16 | 74 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.8E-34 | 25 | 81 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.807 | 27 | 81 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 29 | 65 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MDSAQWLQGI GSRNSEKKPR PQKEQALKCP RCKSTNTKFC YYNNYSLSQP RYFCKSCRRY 60 WTEGGNLRNV PVGGSSRKNK RSSSSSISTH KSIPDLSCPP KHSPQNPKIH HGLHLNSSYN 120 DPPLCGTGIS DLFTQNPNLL ISAPVHNSNS AGFPMHELKP STDFSLENRF GNLEPAVQDN 180 PAILFPAVAD YEVEQLRGLQ RDSNGFWTGM LSGGSW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022844511.1 | 6e-62 | dof zinc finger protein DOF4.6-like isoform X2 | ||||
Swissprot | Q8LAP8 | 5e-36 | DOF46_ARATH; Dof zinc finger protein DOF4.6 | ||||
TrEMBL | A0A4D9BQU5 | 1e-71 | A0A4D9BQU5_SALSN; Uncharacterized protein | ||||
STRING | VIT_16s0098g01420.t01 | 1e-59 | (Vitis vinifera) | ||||
STRING | POPTR_0001s11130.1 | 1e-59 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 1e-32 | Dof family protein |
Publications ? help Back to Top | |||
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