PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00022800-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | Dof | ||||||||
Protein Properties | Length: 265aa MW: 27611.6 Da PI: 10.5489 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.7 | 2.6e-38 | 38 | 93 | 5 | 60 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprCds+ntkfCyynnyslsqPryfCkaCrryWt+GG+lrnvPvGgg+rk+k+ SMil_00022800-RA_Salv 38 PPRCPRCDSSNTKFCYYNNYSLSQPRYFCKACRRYWTHGGSLRNVPVGGGCRKSKR 93 568***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 29.143 | 39 | 93 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.4E-33 | 40 | 93 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 41 | 77 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-18 | 48 | 88 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MDGARNEEGP MQQQDLQQRA RPPENHAAAQ GHGHQPSPPR CPRCDSSNTK FCYYNNYSLS 60 QPRYFCKACR RYWTHGGSLR NVPVGGGCRK SKRPRVSSPS SSSNTLAPRP QGVLTAAARP 120 QNPTAVIAGQ PSRPVAPSLG GGFYASGSFM SSLAAMQTGG MNPGAAAMGG GGRLGSNMAL 180 LQGMSFQSLR SPPPTHFFPP RQNLIPPGTF SSWTQSVISA GATSSSAASA AGMWSSSSGG 240 GGDRAGSSFA ANQWSDCNPG FNPSE |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00405 | DAP | Transfer from AT3G52440 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096324.2 | 9e-65 | dof zinc finger protein DOF3.1 | ||||
TrEMBL | A0A4D8XST3 | 7e-86 | A0A4D8XST3_SALSN; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA24738 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21340.1 | 8e-24 | Dof family protein |